RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SCN2BO60939 215 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 WDR1O75083 606 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 TRAPPC6AO75865 159 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 NKX2-2O95096 273 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 IL33O95760 270 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 G6PDP11413 515 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 GRK2P25098 689 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 NTSP30990 170 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 CEACAM8P31997 349 aaPredicted RBP9.68□□□□□ -0.86
CD44-227ENST00000528086 GABRA3P34903 492 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 STARP49675 285 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 LHX2P50458 406 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 DIO3P55073 304 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 ABCE1P61221 599 aaKnown RBP9.68□□□□□ -0.86
CD44-227ENST00000528086 BST1Q10588 318 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 ZNF155Q12901 538 aaPredicted RBP9.68□□□□□ -0.86
CD44-227ENST00000528086 DUSP5Q16690 384 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 CYP27C1Q4G0S4 372 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 IL23RQ5VWK5 629 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 MFSD12Q6NUT3 480 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 LRIG3Q6UXM1 1119 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 B3GNT6Q6ZMB0 384 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 ADGRE4PQ86SQ3 457 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 GALNT10Q86SR1 603 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 PLCZ1Q86YW0 608 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 RELL2Q8NC24 303 aaPredicted RBP9.68□□□□□ -0.86
CD44-227ENST00000528086 TNIP2Q8NFZ5 429 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 OR1J4Q8NGS1 313 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 PSMA8Q8TAA3 256 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 SARAFQ96BY9 339 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 ZNF524Q96C55 264 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 PPCDCQ96CD2 204 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 TLCD1Q96CP7 247 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 FAM120BQ96EK7 910 aaKnown RBP9.68□□□□□ -0.86
CD44-227ENST00000528086 PPP1R36Q96LQ0 422 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 SERHL2Q9H4I8 314 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 CXorf36Q9H7Y0 433 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 AKTIPQ9H8T0 292 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 EQTNQ9NQ60 294 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 ACSS1Q9NUB1 689 aaPredicted RBP9.68□□□□□ -0.86
CD44-227ENST00000528086 PNPOQ9NVS9 261 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 CBLCQ9ULV8 474 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 TMED5Q9Y3A6 229 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 PCDHGB3Q9Y5G1 929 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 ACTL7BQ9Y614 415 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 KCNE3Q9Y6H6 103 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 SPG11Q96JI7 2443 aa9.68□□□□□ -0.86
CD44-227ENST00000528086 AKAP6Q13023 2319 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 C15orf38-AP3S2A0A0A6YYH1 394 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 FAM90A27PA6NNH2 459 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 TM9SF1O15321 606 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 ABCB7O75027 752 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 COQ9O75208 318 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 SLITRK5O94991 958 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 EPPINO95925 133 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 ELAVL4P26378 380 aaKnown RBP9.67□□□□□ -0.86
CD44-227ENST00000528086 CHRNB4P30926 498 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 EVI2BP34910 448 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 SLC1A6P48664 564 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 MASP1P48740 699 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 ZNF136P52737 540 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 CLDN18P56856 261 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 C21orf58P58505 322 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 MRPS22P82650 360 aaKnown RBP9.67□□□□□ -0.86
CD44-227ENST00000528086 MLC1Q15049 377 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 PDCD2Q16342 344 aaPredicted RBP9.67□□□□□ -0.86
CD44-227ENST00000528086 GRAMD1BQ3KR37 738 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 WLSQ5T9L3 541 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 TMEM211Q6ICI0 200 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 MARCH3Q86UD3 253 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 LSRQ86X29 649 aaPredicted RBP9.67□□□□□ -0.86
CD44-227ENST00000528086 TRIM42Q8IWZ5 723 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 NUP43Q8NFH3 380 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 OR2M3Q8NG83 312 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 OR4C3Q8NH37 302 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 FBXO30Q8TB52 745 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 ARL8AQ96BM9 186 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 MTERF3Q96E29 417 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 PPP3R2Q96LZ3 170 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 SPOCK3Q9BQ16 436 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 YIPF4Q9BSR8 244 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 TMBIM4Q9HC24 238 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 EML4Q9HC35 981 aaKnown RBP9.67□□□□□ -0.86
CD44-227ENST00000528086 DDX18Q9NVP1 670 aaKnown RBP9.67□□□□□ -0.86
CD44-227ENST00000528086 GPATCH2Q9NW75 528 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 ALKBH4Q9NXW9 302 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 ASIC5Q9NY37 505 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 KLRF1Q9NZS2 232 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 MED11Q9P086 117 aa9.67□□□□□ -0.86
CD44-227ENST00000528086 CELSR1Q9NYQ6 3014 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 IGLV3-32A0A0A0MS00 114 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 TMEM120BA0PK00 339 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 FIGNL2A6NMB9 653 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 TMEM114B3SHH9 223 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 H0YC42 278 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 SDHDO14521 159 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 OIP5O43482 229 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 SCO2O43819 266 aa9.66□□□□□ -0.86
CD44-227ENST00000528086 SNNO75324 88 aaPredicted RBP9.66□□□□□ -0.86
CD44-227ENST00000528086 CBR3O75828 277 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms