RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 B3GNT4Q9C0J1 378 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 SEMA6CQ9H3T2 930 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 NANSQ9NR45 359 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 TMEM184CQ9NVA4 438 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 GPR83Q9NYM4 423 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 NLGN3Q9NZ94 848 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 GLTPQ9NZD2 209 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 CYB5R1Q9UHQ9 305 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 PCOLCE2Q9UKZ9 415 aa8.15□□□□□ -1.1
LIMCH1-209ENST00000509277 KIAA0513O60268 411 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 RDH16O75452 317 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 CSF2RBP32927 897 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 CSTF2P33240 577 aaKnown RBP eCLIP8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 S100A3P33764 101 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 FEN1P39748 380 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 GRK6P43250 576 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 CRISP3P54108 245 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 DEFA5Q01523 94 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 TCF15Q12870 199 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 HSPB3Q12988 150 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 KRR1Q13601 381 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 TUBA3CQ13748 450 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF750Q32MQ0 723 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 FBXO42Q6P3S6 717 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 L3MBTL4Q8NA19 623 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 FBXO15Q8NCQ5 510 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 OR9Q1Q8NGQ5 310 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 FBXW5Q969U6 566 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 OR6C1Q96RD1 312 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 IL4I1Q96RQ9 567 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 HOPXQ9BPY8 73 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 WACQ9BTA9 647 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 CLEC4MQ9H2X3 399 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 ZNF304Q9HCX3 659 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 ATP13A2Q9NQ11 1180 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 ARMC1Q9NVT9 282 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 AHSPQ9NZD4 102 aa8.15□□□□□ -1.11
LIMCH1-209ENST00000509277 A0A0G2JMP0 313 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 DNAJB6O75190 326 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 SDC1P18827 310 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 PTX3P26022 381 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 GPAT3Q53EU6 434 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 CDKL4Q5MAI5 379 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 RBM48Q5RL73 367 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 KHDRBS2Q5VWX1 349 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC23A3Q6PIS1 610 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 TMPRSS9Q7Z410 1059 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 HDDC2Q7Z4H3 204 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 RABEPKQ7Z6M1 372 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC34A3Q8N130 599 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 PACRGLQ8N7B6 248 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 IL17RDQ8NFM7 739 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 PEX11GQ96HA9 241 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 FRMD6Q96NE9 622 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 APOL4Q9BPW4 351 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 EQTNQ9NQ60 294 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 ING3Q9NXR8 418 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 CEP295Q9C0D2 2601 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 FABP12A6NFH5 140 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 FAM227AF5H4B4 570 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 PLPP1O14494 284 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 PDPK1O15530 556 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 HYAL3O43820 417 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 APOC3P02656 99 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 ALPLP05186 524 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 RETP07949 1114 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 ICAM2P13598 275 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 FASLGP48023 281 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 POLR2JP52435 117 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 GALEQ14376 348 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 FAM69BQ5VUD6 431 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 FCRL6Q6DN72 434 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 LAIR1Q6GTX8 287 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 MAMSTRQ6ZN01 415 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 SPRED1Q7Z699 444 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 COMMD7Q86VX2 200 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 LAX1Q8IWV1 398 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 BEST4Q8NFU0 473 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 WDR36Q8NI36 951 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 MUL1Q969V5 352 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 RGMAQ96B86 450 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 DOK1Q99704 481 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 C1QTNF3Q9BXJ4 246 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 SLIRPQ9GZT3 109 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 ANKRA2Q9H9E1 313 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 APMAPQ9HDC9 416 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 FGF21Q9NSA1 209 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 TEX10Q9NXF1 929 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 EIF3KQ9UBQ5 218 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 CD300AQ9UGN4 299 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 SLC23A1Q9UHI7 598 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 POMT2Q9UKY4 750 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 MKL2Q9ULH7 1088 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 RUVBL1Q9Y265 456 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 NAALAD2Q9Y3Q0 740 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 CACNA1CQ13936 2221 aa8.14□□□□□ -1.11
LIMCH1-209ENST00000509277 A0A1W2PQM1 296 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 NUDT21O43809 227 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 CPNE6O95741 557 aa8.13□□□□□ -1.11
LIMCH1-209ENST00000509277 PTTG1O95997 202 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms