RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 FADS2O95864 444 aaKnown RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 DBIP07108 87 aaKnown RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 ACP2P11117 423 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 CD36P16671 472 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 ENDOUP21128 410 aaKnown RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 MMP11P24347 488 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 FPR3P25089 353 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 ALDH4A1P30038 563 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 C21orf33P30042 268 aaPredicted RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 GALNSP34059 522 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 STAT5AP42229 794 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 ENTPD1P49961 510 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 BMXP51813 675 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 PDX1P52945 283 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 EEF1A1P68104 462 aaKnown RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 HHEXQ03014 270 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 BNIP3Q12983 259 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 BIKQ13323 160 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 FAM53BQ14153 422 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 GAS6Q14393 721 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 LARS2Q15031 903 aaKnown RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 ELOCQ15369 112 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 LTB4RQ15722 352 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 MFSD4BQ5TF39 518 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 CASP12Q6UXS9 341 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 RASSF6Q6ZTQ3 369 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 PEX5LQ8IYB4 626 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 SLC16A11Q8NCK7 471 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 B3GNT7Q8NFL0 401 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 OR10G6Q8NH81 332 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 VANGL1Q8TAA9 524 aaPredicted RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 OIT3Q8WWZ8 545 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 PATE1Q8WXA2 126 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 S100ZQ8WXG8 99 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 ACOT11Q8WXI4 607 aaPredicted RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 KAT2AQ92830 837 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 ANKRD9Q96BM1 317 aaPredicted RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 LGALS12Q96DT0 336 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 YIPF4Q9BSR8 244 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 NXF2Q9GZY0 626 aaKnown RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 MAT2BQ9NZL9 334 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 OSGIN1Q9UJX0 560 aa10.02□□□□□ -0.81
USP4-214ENST00000491791 ZNF443Q9Y2A4 671 aaPredicted RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 MRPS2Q9Y399 296 aaKnown RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 RPL36Q9Y3U8 105 aaKnown RBP10.02□□□□□ -0.81
USP4-214ENST00000491791 IRGMA1A4Y4 181 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 FGF17O60258 216 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 KIAA0513O60268 411 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 FCMRO60667 390 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 CNOT3O75175 753 aaKnown RBP10.01□□□□□ -0.81
USP4-214ENST00000491791 DNAJB6O75190 326 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 STX11O75558 287 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 LCKP06239 509 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 STSP08842 583 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 ALOX5P09917 674 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 ADORA3P0DMS8 318 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 ALPPL2P10696 532 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 ZNF12P17014 697 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 PSMB9P28065 219 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 CD38P28907 300 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 OMPP47874 163 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 GABRA4P48169 554 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 RACK1P63244 317 aaKnown RBP10.01□□□□□ -0.81
USP4-214ENST00000491791 SIM1P81133 766 aaPredicted RBP10.01□□□□□ -0.81
USP4-214ENST00000491791 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.01□□□□□ -0.81
USP4-214ENST00000491791 SPEM2Q0P670 501 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 TARDBPQ13148 414 aaKnown RBP eCLIP10.01□□□□□ -0.81
USP4-214ENST00000491791 LPAL2Q16609 132 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 DUSP5Q16690 384 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 DGUOKQ16854 277 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 TIGD6Q17RP2 521 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 TMEM44Q2T9K0 475 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 C6orf132Q5T0Z8 1188 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 ARMC6Q6NXE6 501 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 MBOAT2Q6ZWT7 520 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 SZRD1Q7Z422 152 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 GKN2Q86XP6 184 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 MCATQ8IVS2 390 aaKnown RBP10.01□□□□□ -0.81
USP4-214ENST00000491791 RNF113BQ8IZP6 322 aaKnown RBP10.01□□□□□ -0.81
USP4-214ENST00000491791 ZNF619Q8N2I2 560 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 STX19Q8N4C7 294 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 SPEM1Q8N4L4 309 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 CAMKK1Q8N5S9 505 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 C19orf47Q8N9M1 422 aaKnown RBP10.01□□□□□ -0.81
USP4-214ENST00000491791 C1orf216Q8TAB5 229 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 ZCCHC10Q8TBK6 192 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 FNDC8Q8TC99 324 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 ZG16BQ96DA0 208 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 TCTN2Q96GX1 697 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 ZNF578Q96N58 590 aaPredicted RBP10.01□□□□□ -0.81
USP4-214ENST00000491791 CNTNAP3BQ96NU0 1288 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 LMF2Q9BU23 707 aaKnown RBP10.01□□□□□ -0.81
USP4-214ENST00000491791 TAPBPLQ9BX59 468 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 CNTNAP3Q9BZ76 1288 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 MED17Q9NVC6 651 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 GPR83Q9NYM4 423 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 IL20Q9NYY1 176 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 SLC13A4Q9UKG4 626 aa10.01□□□□□ -0.81
USP4-214ENST00000491791 LSM2Q9Y333 95 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms