RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 UTS2RQ9UKP6 389 aa12.53□□□□□ -0.4
VARS-227ENST00000489979 CCDC188H7C350 402 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 LINC01387J3KSC0 135 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 TLX2O43763 284 aaPredicted RBP12.52□□□□□ -0.41
VARS-227ENST00000489979 CD5LO43866 347 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 KLHL2O95198 593 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 C8BP07358 591 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 IDUAP35475 653 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 MRPS22P82650 360 aaKnown RBP12.52□□□□□ -0.41
VARS-227ENST00000489979 TRAF3Q13114 568 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 STX5Q13190 355 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 GANABQ14697 944 aaKnown RBP12.52□□□□□ -0.41
VARS-227ENST00000489979 SGCBQ16585 318 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 ERCC6LQ2NKX8 1250 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 MROH9Q5TGP6 573 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 PPP4R4Q6NUP7 873 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 CCDC91Q7Z6B0 441 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 MILR1Q7Z6M3 343 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 SLC44A2Q8IWA5 706 aaPredicted RBP12.52□□□□□ -0.41
VARS-227ENST00000489979 METTL25Q8N6Q8 603 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 OR6K3Q8NGY3 331 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 FBF1Q8TES7 1133 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 GFM2Q969S9 779 aaKnown RBP12.52□□□□□ -0.41
VARS-227ENST00000489979 PHF21BQ96EK2 531 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 TRMT61AQ96FX7 289 aaKnown RBP12.52□□□□□ -0.41
VARS-227ENST00000489979 NSUN5Q96P11 429 aaKnown RBP12.52□□□□□ -0.41
VARS-227ENST00000489979 GPR78Q96P69 363 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 NTMT1Q9BV86 223 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 ACTR6Q9GZN1 396 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 ELOVL6Q9H5J4 265 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 ZBTB26Q9HCK0 441 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 CLEC4AQ9UMR7 237 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 EMC9Q9Y3B6 208 aa12.52□□□□□ -0.41
VARS-227ENST00000489979 A0A096LPK6 155 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 OVOL3O00110 214 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 ESRRBO95718 433 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 PDYNP01213 254 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 ALDOAP04075 364 aaKnown RBP12.51□□□□□ -0.41
VARS-227ENST00000489979 CTAGE8P0CG41 777 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 FCGR2AP12318 317 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 SLC6A8P48029 635 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 PSPHP78330 225 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 OCRLQ01968 901 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 CALCOCO2Q13137 446 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 ETFDHQ16134 617 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 FAM219BQ5XKK7 198 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 ALKBH2Q6NS38 261 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 KLC3Q6P597 504 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 CTAGE4Q8IX94 777 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 OR4F6Q8NGB9 312 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 UHMK1Q8TAS1 419 aaKnown RBP12.51□□□□□ -0.41
VARS-227ENST00000489979 RAB3IL1Q8TBN0 382 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 ERP27Q96DN0 273 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 C1GALT1C1Q96EU7 318 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 PRRG4Q9BZD6 226 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 RTN4RQ9BZR6 473 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 PTGES2Q9H7Z7 377 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 FLRT3Q9NZU0 649 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 WHRNQ9P202 907 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 PCTPQ9UKL6 214 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 OR10H1Q9Y4A9 318 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 AP4B1Q9Y6B7 739 aa12.51□□□□□ -0.41
VARS-227ENST00000489979 HMX2A2RU54 273 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 SHISA8B8ZZ34 492 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 FADS1O60427 444 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 PLGP00747 810 aaPredicted RBP12.5□□□□□ -0.41
VARS-227ENST00000489979 SOD3P08294 240 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 STX2P32856 288 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 ACVR1BP36896 505 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 CDKN1AP38936 164 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 CTBP2P56545 445 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 TRA2BP62995 288 aaKnown RBP12.5□□□□□ -0.41
VARS-227ENST00000489979 NAB1Q13506 487 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 CTU2Q2VPK5 515 aaKnown RBP12.5□□□□□ -0.41
VARS-227ENST00000489979 CHRFAM7AQ494W8 412 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 GGTA1PQ4G0N0 100 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 TECRLQ5HYJ1 363 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 GGNQ86UU5 652 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 PLD6Q8N2A8 252 aaKnown RBP12.5□□□□□ -0.41
VARS-227ENST00000489979 C1orf52Q8N6N3 182 aaKnown RBP12.5□□□□□ -0.41
VARS-227ENST00000489979 LILRB1Q8NHL6 650 aaPredicted RBP12.5□□□□□ -0.41
VARS-227ENST00000489979 DUSP19Q8WTR2 217 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 SELENOMQ8WWX9 145 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 EXOSC8Q96B26 276 aaKnown RBP12.5□□□□□ -0.41
VARS-227ENST00000489979 MTBPQ96DY7 904 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 MRRFQ96E11 262 aaKnown RBP12.5□□□□□ -0.41
VARS-227ENST00000489979 ZBED6CLQ96FA7 236 aaPredicted RBP12.5□□□□□ -0.41
VARS-227ENST00000489979 GMPPAQ96IJ6 420 aaPredicted RBP12.5□□□□□ -0.41
VARS-227ENST00000489979 ERP44Q9BS26 406 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 SLCO5A1Q9H2Y9 848 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 FANCFQ9NPI8 374 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 SDHAF3Q9NRP4 125 aa12.5□□□□□ -0.41
VARS-227ENST00000489979 ANK2Q01484 3957 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 EIF1AYO14602 144 aaKnown RBP12.49□□□□□ -0.41
VARS-227ENST00000489979 PHF1O43189 567 aaPredicted RBP12.49□□□□□ -0.41
VARS-227ENST00000489979 ZSCAN12O43309 604 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 SS18L1O75177 396 aaPredicted RBP12.49□□□□□ -0.41
VARS-227ENST00000489979 IL11P20809 199 aa12.49□□□□□ -0.41
VARS-227ENST00000489979 EIF1AXP47813 144 aaKnown RBP12.49□□□□□ -0.41
VARS-227ENST00000489979 ZNF844Q08AG5 666 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms