RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 STK17BO94768 372 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 TNFSF15O95150 251 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 TNFAIP8O95379 198 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 ZIC2O95409 532 aaPredicted RBP13.19□□□□□ -0.3
CUX1-209ENST00000487284 EPPINO95925 133 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 ALPPP05187 535 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 PABPC4LP0CB38 370 aaKnown RBP13.19□□□□□ -0.3
CUX1-209ENST00000487284 MAOAP21397 527 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 IGFBP5P24593 272 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 LIMS1P48059 325 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 DAPP51397 102 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 HMGA2P52926 109 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 GABREP78334 506 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 HPCAP84074 193 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 SPIBQ01892 262 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 SERTAD2Q14140 314 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 LAPTM4AQ15012 233 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 ZIK1Q3SY52 487 aaPredicted RBP13.19□□□□□ -0.3
CUX1-209ENST00000487284 TMEM164Q5U3C3 297 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 MLIPQ5VWP3 458 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 LCN10Q6JVE6 187 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 KRT80Q6KB66 452 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 FRRS1Q6ZNA5 592 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 COMTD1Q86VU5 262 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 GALNT6Q8NCL4 622 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 OR4D11Q8NGI4 311 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 RIT1Q92963 219 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 RBM18Q96H35 190 aaKnown RBP13.19□□□□□ -0.3
CUX1-209ENST00000487284 FBXL20Q96IG2 436 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 ZNF578Q96N58 590 aaPredicted RBP13.19□□□□□ -0.3
CUX1-209ENST00000487284 DGAT2Q96PD7 388 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 PSD2Q9BQI7 771 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 SOX17Q9H6I2 414 aaPredicted RBP13.19□□□□□ -0.3
CUX1-209ENST00000487284 ZNF696Q9H7X3 374 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 ACER3Q9NUN7 267 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 FOXJ2Q9P0K8 574 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 CTSFQ9UBX1 484 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 ORC6Q9Y5N6 252 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 AHCTF1Q8WYP5 2266 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 OR2W5A6NFC9 320 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 J3KTA2 159 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 SOX30O94993 753 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 NKX2-2O95096 273 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 LGI1O95970 557 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 AK1P00568 194 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 YAP1P46937 504 aaKnown RBP13.18□□□□□ -0.3
CUX1-209ENST00000487284 CDH12P55289 794 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 KCNAB2Q13303 367 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 VWA2Q5GFL6 755 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 TYW3Q6IPR3 259 aaKnown RBP13.18□□□□□ -0.3
CUX1-209ENST00000487284 TCTN3Q6NUS6 607 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 FAM199XQ6PEV8 388 aaPredicted RBP13.18□□□□□ -0.3
CUX1-209ENST00000487284 DHRS4L2Q6PKH6 230 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 QSOX2Q6ZRP7 698 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 OR52R1Q8NGF1 315 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 GIPC3Q8TF64 312 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 DHRS1Q96LJ7 313 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 LRFN5Q96NI6 719 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 SDF2Q99470 211 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 LMF2Q9BU23 707 aaKnown RBP13.18□□□□□ -0.3
CUX1-209ENST00000487284 ZNF350Q9GZX5 532 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 SAP130Q9H0E3 1048 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 POLR1BQ9H9Y6 1135 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 NECTIN3Q9NQS3 549 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 FAM118AQ9NWS6 357 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 ACAD8Q9UKU7 415 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 SLC9A8Q9Y2E8 581 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 WDR45Q9Y484 360 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 PCDHGA8Q9Y5G5 932 aa13.18□□□□□ -0.3
CUX1-209ENST00000487284 IGKV3D-11A0A0A0MRZ8 115 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 FFAR1O14842 300 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 FCMRO60667 390 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 SEMA7AO75326 666 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 GADD45GO95257 159 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 DLGAP3O95886 979 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 ONECUT2O95948 504 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 ITGAMP11215 1152 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 PRKAR1BP31321 381 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 EMDP50402 254 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 FOXL2P58012 376 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 ZNF155Q12901 538 aaPredicted RBP13.17□□□□□ -0.3
CUX1-209ENST00000487284 DCST2Q5T1A1 773 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 TTC23Q5W5X9 447 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 AP1ARQ63HQ0 302 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 LACC1Q8IV20 430 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 COX18Q8N8Q8 333 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 PIK3C3Q8NEB9 887 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 VANGL1Q8TAA9 524 aaPredicted RBP13.17□□□□□ -0.3
CUX1-209ENST00000487284 MR1Q95460 341 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 SPRY4Q9C004 299 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 QRSL1Q9H0R6 528 aaKnown RBP13.17□□□□□ -0.3
CUX1-209ENST00000487284 TRIM45Q9H8W5 580 aaPredicted RBP13.17□□□□□ -0.3
CUX1-209ENST00000487284 MTHFD2LQ9H903 347 aaPredicted RBP13.17□□□□□ -0.3
CUX1-209ENST00000487284 FOLH1BQ9HBA9 442 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 MKKSQ9NPJ1 570 aaPredicted RBP13.17□□□□□ -0.3
CUX1-209ENST00000487284 AKAP13Q12802 2813 aa13.17□□□□□ -0.3
CUX1-209ENST00000487284 IGLV3-12A0A075B6K2 115 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 ARRDC5A6NEK1 342 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 M0R3H8 397 aa13.16□□□□□ -0.3
CUX1-209ENST00000487284 SLC16A6O15403 523 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms