RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CCDC151A5D8V7 595 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 HCRTR2O43614 444 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 TNFSF13O75888 250 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 ENO1P06733 434 aaKnown RBP13.12□□□□□ -0.31
SDC1-204ENST00000429035 CTAGE8P0CG41 777 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 PEPDP12955 493 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 CD53P19397 219 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 KCNJ5P48544 419 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 PNLIPRP2P54317 469 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 PKNOX1P55347 436 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 LCP2Q13094 533 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 CTAGE4Q8IX94 777 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 TMEM151AQ8N4L1 468 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 MNS1Q8NEH6 495 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 OR2M3Q8NG83 312 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 FIG4Q92562 907 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 PIK3IP1Q96FE7 263 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 ZC3HAV1LQ96H79 300 aaKnown RBP13.12□□□□□ -0.31
SDC1-204ENST00000429035 MED18Q9BUE0 208 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 PINK1Q9BXM7 581 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 STMN4Q9H169 189 aaPredicted RBP13.12□□□□□ -0.31
SDC1-204ENST00000429035 OPN3Q9H1Y3 402 aaPredicted RBP13.12□□□□□ -0.31
SDC1-204ENST00000429035 MED11Q9P086 117 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 ARID1AO14497 2285 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 A8MXE2 369 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 B4DXG7 233 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 H0YC42 278 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 MSTNO14793 375 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 PLOD3O60568 738 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 POU2F1P14859 743 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 FOSL1P15407 271 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 DDCP20711 480 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 IMPDH1P20839 514 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 PRKAA2P54646 552 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 GAS1P54826 345 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 FOXA1P55317 472 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 TPD52P55327 224 aaPredicted RBP13.11□□□□□ -0.31
SDC1-204ENST00000429035 PSPHP78330 225 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 NKX6-1P78426 367 aaPredicted RBP13.11□□□□□ -0.31
SDC1-204ENST00000429035 FAM27E3Q08E93 113 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 ZNHIT3Q15649 155 aaPredicted RBP13.11□□□□□ -0.31
SDC1-204ENST00000429035 OR2A2Q6IF42 318 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 ZNF550Q7Z398 422 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 SZRD1Q7Z422 152 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 P3H2Q8IVL5 708 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 PGM2Q96G03 612 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 ZNF845Q96IR2 970 aaPredicted RBP13.11□□□□□ -0.31
SDC1-204ENST00000429035 UCN2Q96RP3 112 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 ZNF395Q9H8N7 513 aaPredicted RBP13.11□□□□□ -0.31
SDC1-204ENST00000429035 Q9N2J8 555 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 EQTNQ9NQ60 294 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 BEX4Q9NWD9 120 aaPredicted RBP13.11□□□□□ -0.31
SDC1-204ENST00000429035 TBK1Q9UHD2 729 aa13.11□□□□□ -0.31
SDC1-204ENST00000429035 DSCAMO60469 2012 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 MAP1AP78559 2803 aaPredicted RBP13.1□□□□□ -0.31
SDC1-204ENST00000429035 ZIC3O60481 467 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 GSTA1P08263 222 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 ABHD2P08910 425 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 MYL2P10916 166 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 PYGBP11216 843 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 GCAP28676 217 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 CLK3P49761 638 aaKnown RBP13.1□□□□□ -0.31
SDC1-204ENST00000429035 B3GALT5-AS1P59052 145 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 EEF1A1P68104 462 aaKnown RBP13.1□□□□□ -0.31
SDC1-204ENST00000429035 PSG6Q00889 435 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 LTBQ06643 244 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 GANABQ14697 944 aaKnown RBP13.1□□□□□ -0.31
SDC1-204ENST00000429035 DECR1Q16698 335 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 Q5PR19 223 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 EEF1A1P5Q5VTE0 462 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 TIFABQ6ZNK6 161 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 BTLAQ7Z6A9 289 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 BIVMQ86UB2 503 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 FADS6Q8N9I5 356 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 L3HYPDHQ96EM0 354 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 C18orf12Q96KH6 178 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 GSTO2Q9H4Y5 243 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 PTGES2Q9H7Z7 377 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 SDHAF3Q9NRP4 125 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 ZNF226Q9NYT6 803 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 PSMC3IPQ9P2W1 217 aaPredicted RBP13.1□□□□□ -0.31
SDC1-204ENST00000429035 VPS13CQ709C8 3753 aa13.1□□□□□ -0.31
SDC1-204ENST00000429035 SHISA8B8ZZ34 492 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 RIPK2O43353 540 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 SMPD2O60906 423 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 INHBBP09529 407 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 CCKARP32238 428 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 GPC1P35052 558 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 CD79BP40259 229 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 GSTM5P46439 218 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 EEFSECP57772 596 aaKnown RBP13.09□□□□□ -0.31
SDC1-204ENST00000429035 HSPB3Q12988 150 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 PON3Q15166 354 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 SGCBQ16585 318 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 PRSS53Q2L4Q9 553 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 EXOC3L2Q2M3D2 409 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 CLEC9AQ6UXN8 241 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 MARCH3Q86UD3 253 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 CCDC63Q8NA47 563 aa13.09□□□□□ -0.31
SDC1-204ENST00000429035 FBXO30Q8TB52 745 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms