RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 SBSNQ6UWP8 590 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TIFABQ6ZNK6 161 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TIPARPQ7Z3E1 657 aaKnown RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 R3HCC1LQ7Z5L2 792 aaKnown RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TMEM126BQ8IUX1 230 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 KLHDC8AQ8IYD2 350 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CADM3Q8N126 398 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TCAIMQ8N3R3 496 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 STAG3L4Q8TBR4 150 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 ANKRD49Q8WVL7 239 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 SLC44A1Q8WWI5 657 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 SLC45A3Q96JT2 553 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF285Q96NJ3 590 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 NR1H4Q96RI1 486 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CAPS2Q9BXY5 557 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TXLNGYQ9BZA5 131 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 ULBP3Q9BZM4 244 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 KLHL31Q9H511 634 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CCDC177Q9NQR7 707 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TAS2R10Q9NYW0 307 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 FETUBQ9UGM5 382 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CIDEBQ9UHD4 219 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TAC3Q9UHF0 121 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 OARD1Q9Y530 152 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 ZFC3H1O60293 1989 aaKnown RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 URB1O60287 2271 aaKnown RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PIKFYVEQ9Y2I7 2098 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 COL27A1Q8IZC6 1860 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 IGKV2D-30A0A075B6S6 120 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 A0A0J9YVX5 310 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 LOC101059948A0A1B0GTJ6 334 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 EXOC1LA0A1B0GW35 172 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PGPEP1LA6NFU8 196 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 C21orf140B9A014 251 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 H3BMH7 237 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 K7ENP7 123 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 RIPK2O43353 540 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF749O43361 778 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 SLC25A17O43808 307 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CTSVO60911 334 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 KLHL2O95198 593 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 SNRPAP09012 282 aaKnown RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 RBP1P09455 135 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 RAB40ALP0C0E4 278 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 SLC35E2BP0CK96 405 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 EZRP15311 586 aaKnown RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 EDN2P20800 178 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CXCR2P25025 360 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PSMA4P25789 261 aaKnown RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PSMB5P28074 263 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 RFX2P48378 723 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 THBS3P49746 956 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 SERPINB8P50452 374 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CSRP3P50461 194 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PGGT1BP53609 377 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 RPS15P62841 145 aaKnown RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TSTA3Q13630 321 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 RASA2Q15283 850 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TSNQ15631 228 aaKnown RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 UAP1Q16222 522 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PPP1R3AQ16821 1122 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 FAM83EQ2M2I3 478 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TAF1BQ53T94 588 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 LCE1AQ5T7P2 110 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TMEM268Q5VZI3 342 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 SULT1C3Q6IMI6 304 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 RHBDD2Q6NTF9 364 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 KLC3Q6P597 504 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 C19orf48Q6RUI8 117 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF517Q6ZMY9 492 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 RAPH1Q70E73 1250 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 SERPINA11Q86U17 422 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 ISCA2Q86U28 154 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PAQR7Q86WK9 346 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 C17orf64Q86WR6 236 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 FAM185AQ8N0U4 392 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TBC1D19Q8N5T2 526 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PRR26Q8N8Z3 221 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TTC29Q8NA56 475 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PPFIBP2Q8ND30 876 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 OR4K1Q8NGD4 311 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 B4GALNT2Q8NHY0 566 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 RHEBL1Q8TAI7 183 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 DCAKDQ8WVC6 231 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 NEUROG1Q92886 237 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 MR1Q95460 341 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 MIB2Q96AX9 1013 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 NXNL1Q96CM4 212 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 MTBPQ96DY7 904 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 WBP1Q96G27 269 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF479Q96JC4 524 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 CABS1Q96KC9 395 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 OR2A5Q96R48 311 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 PAFAH2Q99487 392 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 EGFL8Q99944 293 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TREX2Q9BQ50 279 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 C17orf62Q9BQA9 187 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 SELENOSQ9BQE4 189 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 ACAT2Q9BWD1 397 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 NLNQ9BYT8 704 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms