RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ACP2P11117 423 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 GABRA1P14867 456 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 IGFBP2P18065 325 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 GRK2P25098 689 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 GABRA3P34903 492 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 EVI2BP34910 448 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 GPC1P35052 558 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 PRKAG1P54619 331 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 ABCE1P61221 599 aaKnown RBP17.33■□□□□ 0.36
SF3A1-202ENST00000411423 CYP27C1Q4G0S4 372 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 EXOSC6Q5RKV6 272 aaKnown RBP17.33■□□□□ 0.36
SF3A1-202ENST00000411423 IL23RQ5VWK5 629 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 PLXDC2Q6UX71 529 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 GALNT10Q86SR1 603 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 NUP43Q8NFH3 380 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 FBXO30Q8TB52 745 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 PGM2Q96G03 612 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 C16orf58Q96GQ5 468 aa17.33■□□□□ 0.36
SF3A1-202ENST00000411423 ACSS1Q9NUB1 689 aaPredicted RBP17.33■□□□□ 0.36
SF3A1-202ENST00000411423 TM9SF1O15321 606 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 BIRC5O15392 142 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 CBR3O75828 277 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 HSPA4LO95757 839 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 IL33O95760 270 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 PRPS2P11908 318 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 TCEA1P23193 301 aaKnown RBP17.32■□□□□ 0.36
SF3A1-202ENST00000411423 PTGER4P35408 488 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 KRT20P35900 424 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 ASMTP46597 345 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 MANFP55145 182 aaKnown RBP17.32■□□□□ 0.36
SF3A1-202ENST00000411423 GFRA1P56159 465 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 PDCD2Q16342 344 aaPredicted RBP17.32■□□□□ 0.36
SF3A1-202ENST00000411423 ATP6AP1LQ52LC2 224 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 RIPPLY2Q5TAB7 128 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 POMZP3Q6PJE2 187 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 LRIG3Q6UXM1 1119 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 APOOLQ6UXV4 268 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 ZAR1Q86SH2 424 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 RIMKLAQ8IXN7 391 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 FNDC5Q8NAU1 212 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 TNIP2Q8NFZ5 429 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 PPP1R14CQ8TAE6 165 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 ABTB1Q969K4 478 aaPredicted RBP17.32■□□□□ 0.36
SF3A1-202ENST00000411423 TUBGCP3Q96CW5 907 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 MTERF3Q96E29 417 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 ZBED6CLQ96FA7 236 aaPredicted RBP17.32■□□□□ 0.36
SF3A1-202ENST00000411423 Q9N2J8 555 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 KCNK9Q9NPC2 374 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 CAMK2AQ9UQM7 478 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 ACTL7BQ9Y614 415 aa17.32■□□□□ 0.36
SF3A1-202ENST00000411423 AHRRA9YTQ3 701 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 TMEM114B3SHH9 223 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 ZIC3O60481 467 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 NKX2-2O95096 273 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 EPPINO95925 133 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 G6PDP11413 515 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 ZFP36L2P47974 494 aaKnown RBP17.31■□□□□ 0.36
SF3A1-202ENST00000411423 RFX3P48380 749 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 STARP49675 285 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 WDR4P57081 412 aaKnown RBP17.31■□□□□ 0.36
SF3A1-202ENST00000411423 PSPHP78330 225 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 MRPS22P82650 360 aaKnown RBP17.31■□□□□ 0.36
SF3A1-202ENST00000411423 MEX3BQ6ZN04 569 aaKnown RBP17.31■□□□□ 0.36
SF3A1-202ENST00000411423 FADS6Q8N9I5 356 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 SLC16A11Q8NCK7 471 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 OR14L1PQ8NHC6 308 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 ZFP28Q8NHY6 868 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 FAM120BQ96EK7 910 aaKnown RBP17.31■□□□□ 0.36
SF3A1-202ENST00000411423 RMND5BQ96G75 393 aaPredicted RBP17.31■□□□□ 0.36
SF3A1-202ENST00000411423 SPOCK3Q9BQ16 436 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 YIPF4Q9BSR8 244 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 G6PC3Q9BUM1 346 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 FBXO34Q9NWN3 711 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 PDZD2O15018 2839 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 PKDREJQ9NTG1 2253 aa17.31■□□□□ 0.36
SF3A1-202ENST00000411423 ZWINTO95229 277 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 HOXD4P09016 255 aaPredicted RBP17.3■□□□□ 0.36
SF3A1-202ENST00000411423 MSX1P28360 303 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 MAPK1P28482 360 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 SRD5A2P31213 254 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 CEACAM8P31997 349 aaPredicted RBP17.3■□□□□ 0.36
SF3A1-202ENST00000411423 HPCAL1P37235 193 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 SLC1A6P48664 564 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 B3GALT5-AS1P59052 145 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 KRTAP10-9P60411 292 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 STX5Q13190 355 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 MLC1Q15049 377 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 DUSP5Q16690 384 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 DECR1Q16698 335 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 GRAMD1BQ3KR37 738 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 BEND6Q5SZJ8 279 aaPredicted RBP17.3■□□□□ 0.36
SF3A1-202ENST00000411423 MFSD12Q6NUT3 480 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 MARCH3Q86UD3 253 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 TRIM42Q8IWZ5 723 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 ANKRD42Q8N9B4 389 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 RELL2Q8NC24 303 aaPredicted RBP17.3■□□□□ 0.36
SF3A1-202ENST00000411423 OR2M3Q8NG83 312 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 COQ8BQ96D53 544 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 DSN1Q9H410 356 aa17.3■□□□□ 0.36
SF3A1-202ENST00000411423 CXorf36Q9H7Y0 433 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms