RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ING5Q8WYH8 240 aa19.67■□□□□ 0.74
CTCF-202ENST00000401394 AP3S1Q92572 193 aa19.67■□□□□ 0.74
CTCF-202ENST00000401394 IRF7Q92985 503 aa19.67■□□□□ 0.74
CTCF-202ENST00000401394 AMDHD1Q96NU7 426 aa19.67■□□□□ 0.74
CTCF-202ENST00000401394 COL4A3Q01955 1670 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 CHP2O43745 196 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 ZIC2O95409 532 aaPredicted RBP19.66■□□□□ 0.74
CTCF-202ENST00000401394 ACADLP28330 430 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 TM4SF4P48230 202 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 MRPL28Q13084 256 aaKnown RBP19.66■□□□□ 0.74
CTCF-202ENST00000401394 LTB4RQ15722 352 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 SLC25A35Q3KQZ1 300 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 ZNF805Q5CZA5 627 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 MZT2BQ6NZ67 158 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 C12orf40Q86WS4 652 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 ORAI1Q96D31 301 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 HINT3Q9NQE9 182 aaKnown RBP19.66■□□□□ 0.74
CTCF-202ENST00000401394 MTCL1Q9Y4B5 1905 aaKnown RBP19.66■□□□□ 0.74
CTCF-202ENST00000401394 TMEM129A0AVI4 362 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 LRG1P02750 347 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 DCDC1P59894 354 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 MAB21L1Q13394 359 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 ZNF697Q5TEC3 545 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 SLC39A11Q8N1S5 342 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 TMEM99Q8N816 258 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 DACT3Q96B18 629 aaPredicted RBP19.66■□□□□ 0.74
CTCF-202ENST00000401394 C11orf49Q9H6J7 331 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 ALPK2Q86TB3 2170 aa19.66■□□□□ 0.74
CTCF-202ENST00000401394 PDE9AO76083 593 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 SRPRAP08240 638 aaKnown RBP19.65■□□□□ 0.74
CTCF-202ENST00000401394 CLUP10909 449 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 SLC16A1P53985 500 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 PLBD1Q6P4A8 553 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 OR4D9Q8NGE8 314 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 TFGQ92734 400 aaPredicted RBP19.65■□□□□ 0.74
CTCF-202ENST00000401394 TIFAQ96CG3 184 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 FBXL4Q9UKA2 621 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 ABT1Q9ULW3 272 aaKnown RBP19.65■□□□□ 0.74
CTCF-202ENST00000401394 TRDV1A0A1B0GX56 115 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 ORC5O43913 435 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 PCSK2P16519 638 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 BTCP35070 178 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 RPL3P39023 403 aaKnown RBP19.65■□□□□ 0.74
CTCF-202ENST00000401394 E2F1Q01094 437 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 CAMK1Q14012 370 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 ARL9Q6T311 187 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 GLRX5Q86SX6 157 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 C17orf64Q86WR6 236 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 CCDC28AQ8IWP9 274 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 AKAP1Q92667 903 aaKnown RBP eCLIP19.65■□□□□ 0.74
CTCF-202ENST00000401394 MED30Q96HR3 178 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 SAMD8Q96LT4 415 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 THAP7Q9BT49 309 aaPredicted RBP19.65■□□□□ 0.74
CTCF-202ENST00000401394 KLHL1Q9NR64 748 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 SLCO1C1Q9NYB5 712 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 ZNF624Q9P2J8 865 aaPredicted RBP19.65■□□□□ 0.74
CTCF-202ENST00000401394 RASD1Q9Y272 281 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 HCN1O60741 890 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 ALDH1A1P00352 501 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 ACVR1BP36896 505 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 HCCSP53701 268 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 MINDY4Q4G0A6 757 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 CD200R1LQ6Q8B3 271 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 KLHDC8AQ8IYD2 350 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 RASSF5Q8WWW0 418 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 MED18Q9BUE0 208 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 FGF20Q9NP95 211 aaPredicted RBP19.65■□□□□ 0.74
CTCF-202ENST00000401394 WSB2Q9NYS7 404 aaPredicted RBP19.65■□□□□ 0.74
CTCF-202ENST00000401394 ATG4BQ9Y4P1 393 aa19.65■□□□□ 0.74
CTCF-202ENST00000401394 SNRNP200O75643 2136 aaKnown RBP19.64■□□□□ 0.74
CTCF-202ENST00000401394 COL4A6Q14031 1691 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 HOXA2O43364 376 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 INHAP05111 366 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 SLC3A1Q07837 685 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 AGERQ15109 404 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 PXDC1Q5TGL8 231 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 DPPA4Q7L190 304 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 PRSS45Q7RTY3 260 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 METTL3Q86U44 580 aaKnown RBP19.64■□□□□ 0.73
CTCF-202ENST00000401394 PLCZ1Q86YW0 608 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 ZNF655Q8N720 491 aaPredicted RBP19.64■□□□□ 0.73
CTCF-202ENST00000401394 CNRIP1Q96F85 164 aaPredicted RBP19.64■□□□□ 0.73
CTCF-202ENST00000401394 ZFP3Q96NJ6 502 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 ENAMQ9NRM1 1142 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 SLC9A8Q9Y2E8 581 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 OBSL1O75147 1896 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 LZTS3O60299 673 aaPredicted RBP19.64■□□□□ 0.73
CTCF-202ENST00000401394 HLA-DQB1P01920 261 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 DRD5P21918 477 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 KLHL12Q53G59 568 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 ZNF311Q5JNZ3 666 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 ENTPD8Q5MY95 495 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 LINC01555Q8NAE3 123 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 DTD2Q96FN9 168 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 TIMP4Q99727 224 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 NKIRAS2Q9NYR9 191 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 PCDHGB7Q9Y5F8 929 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 NOTCH4Q99466 2003 aa19.64■□□□□ 0.73
CTCF-202ENST00000401394 ATG2BQ96BY7 2078 aa19.63■□□□□ 0.73
CTCF-202ENST00000401394 GYPBP06028 91 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms