RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 TATDN3Q17R31 274 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 SWI5Q1ZZU3 235 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 ENTPD8Q5MY95 495 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 RSPO2Q6UXX9 243 aaPredicted RBP6.18□□□□□ -1.42
SMC1A-202ENST00000375340 DPPA4Q7L190 304 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 TMPRSS12Q86WS5 348 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 CAMKVQ8NCB2 501 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 BEST4Q8NFU0 473 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 CCDC107Q8WV48 283 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 ORAI3Q9BRQ5 295 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 MROQ9BYG7 248 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 RXFP3Q9NSD7 469 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 RNF186Q9NXI6 227 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 ZNF639Q9UID6 485 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 OR52A4PA6NMU1 304 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 GABARAPO95166 117 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 KLKB1P03952 638 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 SLC14A1Q13336 389 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 NKG7Q16617 165 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 TRIM46Q7Z4K8 759 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 PDZD3Q86UT5 571 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 RASGEF1AQ8N9B8 481 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 ZNF480Q8WV37 535 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 C4orf36Q96KX1 117 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 PINK1Q9BXM7 581 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 OSGIN1Q9UJX0 560 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 TARM1B6A8C7 271 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 RNGTTO60942 597 aaKnown RBP6.18□□□□□ -1.42
SMC1A-202ENST00000375340 TRIM3O75382 744 aaPredicted RBP6.18□□□□□ -1.42
SMC1A-202ENST00000375340 PAK4O96013 591 aaPredicted RBP6.18□□□□□ -1.42
SMC1A-202ENST00000375340 PLATP00750 562 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 TNFP01375 233 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 CSF2RAP15509 400 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 HSD11B1P28845 292 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 SLC6A9P48067 706 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 EXOSC7Q15024 291 aaKnown RBP6.18□□□□□ -1.42
SMC1A-202ENST00000375340 ZNF776Q68DI1 518 aaPredicted RBP6.18□□□□□ -1.42
SMC1A-202ENST00000375340 SDR9C7Q8NEX9 313 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 HMGCLL1Q8TB92 370 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 ADAMTS16Q8TE57 1224 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 IGLV3-10A0A075B6K4 115 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 C1orf226A1L170 272 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 RHPN2P1A8MT19 583 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 MRPS14O60783 128 aaKnown RBP6.18□□□□□ -1.42
SMC1A-202ENST00000375340 LDB3O75112 727 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 KLF8O95600 359 aaPredicted RBP6.18□□□□□ -1.42
SMC1A-202ENST00000375340 ZNF24P17028 368 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 DNASE1P24855 282 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 ELAVL4P26378 380 aaKnown RBP6.18□□□□□ -1.42
SMC1A-202ENST00000375340 CHAF1BQ13112 559 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 DEFB110Q30KQ9 67 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 PAQR6Q6TCH4 344 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 GALNT6Q8NCL4 622 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 OR52I1Q8NGK6 324 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 SNAPC3Q92966 411 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 YIPF6Q96EC8 236 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 UHRF1Q96T88 793 aaPredicted RBP6.18□□□□□ -1.42
SMC1A-202ENST00000375340 PDFQ9HBH1 243 aa6.18□□□□□ -1.42
SMC1A-202ENST00000375340 ZNF638Q14966 1978 aaKnown RBP6.17□□□□□ -1.42
SMC1A-202ENST00000375340 HMX3A6NHT5 357 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 POM121CA8CG34 1229 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 NPIPA5E9PKD4 350 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 S100A9P06702 114 aaKnown RBP6.17□□□□□ -1.42
SMC1A-202ENST00000375340 CHRNB1P11230 501 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 IL1RNP18510 177 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 VAMP1P23763 118 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 GIFP27352 417 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 SLC6A11P48066 632 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 ISL1P61371 349 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 WDR5P61964 334 aaKnown RBP6.17□□□□□ -1.42
SMC1A-202ENST00000375340 AGAP6Q5VW22 663 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 TMEFF1Q8IYR6 380 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 PDLIM5Q96HC4 596 aaKnown RBP6.17□□□□□ -1.42
SMC1A-202ENST00000375340 AGAP4Q96P64 663 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 OR7D2Q96RA2 312 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 SLC6A7Q99884 636 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 ACTRT3Q9BYD9 372 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 C11orf54Q9H0W9 315 aaPredicted RBP6.17□□□□□ -1.42
SMC1A-202ENST00000375340 CHMP1AQ9HD42 196 aaPredicted RBP6.17□□□□□ -1.42
SMC1A-202ENST00000375340 GPN3Q9UHW5 284 aaPredicted RBP6.17□□□□□ -1.42
SMC1A-202ENST00000375340 NPIPA1Q9UND3 350 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 METTL15A6NJ78 407 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 SRP9P49458 86 aaKnown RBP6.17□□□□□ -1.42
SMC1A-202ENST00000375340 SQSTM1Q13501 440 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 INAVAQ3KP66 663 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 CCSAPQ6IQ19 270 aaPredicted RBP6.17□□□□□ -1.42
SMC1A-202ENST00000375340 RBM45Q8IUH3 476 aaKnown RBP6.17□□□□□ -1.42
SMC1A-202ENST00000375340 SLC38A5Q8WUX1 472 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 ASB12Q8WXK4 309 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 C16orf58Q96GQ5 468 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 KLHL21Q9UJP4 597 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 YARS2Q9Y2Z4 477 aaKnown RBP6.17□□□□□ -1.42
SMC1A-202ENST00000375340 PLXNA1Q9UIW2 1896 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 TEX46H3BTG2 121 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 LATS1O95835 1130 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 ALDOBP05062 364 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 SCG5P05408 212 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 RAB3BP20337 219 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 AHRP35869 848 aa6.17□□□□□ -1.42
SMC1A-202ENST00000375340 GPM6BQ13491 265 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms