RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SF3A2Q15428 464 aaKnown RBP6.95□□□□□ -1.3
VPS13A-202ENST00000357409 VWA2Q5GFL6 755 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 GPALPP1Q8IXQ4 340 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 KDM1BQ8NB78 822 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 S100A16Q96FQ6 103 aaKnown RBP6.95□□□□□ -1.3
VPS13A-202ENST00000357409 C12orf42Q96LP6 360 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 RANBP3Q9H6Z4 567 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-202ENST00000357409 CPNE7Q9UBL6 633 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 TEX264Q9Y6I9 313 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 SCELO95171 688 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 RAB4AP20338 218 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 S1PR1P21453 382 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 PITPNBP48739 271 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 TAGLNQ01995 201 aaKnown RBP6.95□□□□□ -1.3
VPS13A-202ENST00000357409 HSD17B12Q53GQ0 312 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF704Q6ZNC4 412 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-202ENST00000357409 GRAMD2AQ8IUY3 354 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 PHC2Q8IXK0 858 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 SAMD12Q8N8I0 201 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 SNIP1Q8TAD8 396 aaKnown RBP6.95□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF675Q8TD23 568 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF431Q8TF32 576 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-202ENST00000357409 GEMIN6Q8WXD5 167 aaKnown RBP6.95□□□□□ -1.3
VPS13A-202ENST00000357409 ITPAQ9BY32 194 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 FAM117AQ9C073 453 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 TAAR2Q9P1P5 351 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 MAN2B2Q9Y2E5 1009 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 NWD1Q149M9 1564 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 RAB6AP20340 208 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 HCCSP53701 268 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 CCSMST1Q4G0I0 132 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 EDAQ92838 391 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 SEMA4CQ9C0C4 833 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 ACTL8Q9H568 366 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 PCTPQ9UKL6 214 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 OARD1Q9Y530 152 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 MAGED1Q9Y5V3 778 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-202ENST00000357409 TRAV18A0A075B6X5 111 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 SLC16A7O60669 478 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 UGDHO60701 494 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF217O75362 1048 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 YIF1AO95070 293 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 PRSS12P56730 875 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 SH3BP2P78314 561 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 LETMD1Q6P1Q0 360 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 DHRS13Q6UX07 377 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 TRAM1L1Q8N609 369 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 MINDY2Q8NBR6 621 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 ACVR1CQ8NER5 493 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 SLC35B2Q8TB61 432 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 THAP6Q8TBB0 222 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 NTMT1Q9BV86 223 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 DNTTIP1Q9H147 329 aa6.95□□□□□ -1.3
VPS13A-202ENST00000357409 LAMP1P11279 417 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 HLCSP50747 726 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 PITPNAQ00169 270 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 CPEB2Q7Z5Q1 589 aaKnown RBP6.94□□□□□ -1.3
VPS13A-202ENST00000357409 GJD3Q8N144 294 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 C7orf50Q9BRJ6 194 aaKnown RBP6.94□□□□□ -1.3
VPS13A-202ENST00000357409 PTTG3PQ9NZH4 202 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 TESQ9UGI8 421 aaKnown RBP6.94□□□□□ -1.3
VPS13A-202ENST00000357409 TRPM1Q7Z4N2 1603 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 PLSCR5A0PG75 271 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 RBBP9O75884 186 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 PRKAR1BP31321 381 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 PAGE3Q5JUK9 113 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 KRBOX4Q5JUW0 171 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 KIAA0319Q5VV43 1072 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 PLCXD3Q63HM9 321 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 LRP10Q7Z4F1 713 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 FAM185AQ8N0U4 392 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 MLXQ9UH92 298 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 ACSL5Q9ULC5 683 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 CLDN25C9JDP6 229 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 H7C0S8 307 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 TBX10O75333 385 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 S1PR4O95977 384 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 HOXB5P09067 269 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 GSTT2BP0CG30 244 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 FUT1P19526 365 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF616Q08AN1 781 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 OR52N5Q8NH56 324 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 UBALD1Q8TB05 177 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 MAPKAP1Q9BPZ7 522 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 RCOR3Q9P2K3 495 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-202ENST00000357409 MBD2Q9UBB5 411 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 TGDSO95455 350 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 APBB3O95704 486 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 IGHV3-13P01766 116 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 IGHV3-7P01780 117 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 SEC23BQ15437 767 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 AADACL4Q5VUY2 407 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 SLC46A3Q7Z3Q1 461 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 DEFB124Q8NES8 71 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 C17orf50Q8WW18 174 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 FCAMRQ8WWV6 532 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 ECHDC3Q96DC8 303 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 LRR1Q96L50 414 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 TRIB1Q96RU8 372 aa6.94□□□□□ -1.3
VPS13A-202ENST00000357409 CLSTN3Q9BQT9 956 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms