RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 PRKAG1P54619 331 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 GAS1P54826 345 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 ZNHIT3Q15649 155 aaPredicted RBP14.84□□□□□ -0.03
LSM1-201ENST00000311351 PDCD2Q16342 344 aaPredicted RBP14.84□□□□□ -0.03
LSM1-201ENST00000311351 C6orf136Q5SQH8 315 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 MEX3BQ6ZN04 569 aaKnown RBP14.84□□□□□ -0.03
LSM1-201ENST00000311351 GDF7Q7Z4P5 450 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 LIX1LQ8IVB5 337 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 ZNF781Q8N8C0 355 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 FNDC5Q8NAU1 212 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 OR14L1PQ8NHC6 308 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 PIK3R3Q92569 461 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 TUBGCP3Q96CW5 907 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 ZBED6CLQ96FA7 236 aaPredicted RBP14.84□□□□□ -0.03
LSM1-201ENST00000311351 PPP1R36Q96LQ0 422 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 OR2B2Q9GZK3 357 aa14.84□□□□□ -0.03
LSM1-201ENST00000311351 NUP214P35658 2090 aaPredicted RBP14.84□□□□□ -0.03
LSM1-201ENST00000311351 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 TM9SF1O15321 606 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 CBR3O75828 277 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 IGKV1D-16P01601 117 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 PRPS2P11908 318 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 BGNP21810 368 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 GABRA3P34903 492 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 ZFP36L2P47974 494 aaKnown RBP14.83□□□□□ -0.04
LSM1-201ENST00000311351 MANFP55145 182 aaKnown RBP14.83□□□□□ -0.04
LSM1-201ENST00000311351 MRPS22P82650 360 aaKnown RBP14.83□□□□□ -0.04
LSM1-201ENST00000311351 STX5Q13190 355 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 DECR1Q16698 335 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 CYP27C1Q4G0S4 372 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 NHSL2Q5HYW2 709 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 RIPPLY2Q5TAB7 128 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 IL23RQ5VWK5 629 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 GALNT10Q86SR1 603 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 HOMEZQ8IX15 550 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 ZNF295-AS1Q8N0V1 137 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 KRTCAP2Q8N6L1 136 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 ACBD4Q8NC06 268 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 NAXEQ8NCW5 288 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 NUP43Q8NFH3 380 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 ABTB1Q969K4 478 aaPredicted RBP14.83□□□□□ -0.04
LSM1-201ENST00000311351 MTERF3Q96E29 417 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 GIMAP5Q96F15 307 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 OTUB1Q96FW1 271 aaPredicted RBP14.83□□□□□ -0.04
LSM1-201ENST00000311351 RMND5BQ96G75 393 aaPredicted RBP14.83□□□□□ -0.04
LSM1-201ENST00000311351 WDYHV1Q96HA8 205 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 RTN4RQ9BZR6 473 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 C20orf27Q9GZN8 174 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 ENKD1Q9H0I2 346 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 RUBCNLQ9H714 662 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 KCNK9Q9NPC2 374 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 ACSS1Q9NUB1 689 aaPredicted RBP14.83□□□□□ -0.04
LSM1-201ENST00000311351 ATP6V1HQ9UI12 483 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 DKKL1Q9UK85 242 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 PCDHGB3Q9Y5G1 929 aa14.83□□□□□ -0.04
LSM1-201ENST00000311351 BIRC5O15392 142 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 FADS1O60427 444 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 ERLIN1O75477 346 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 IL33O95760 270 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 HOXD4P09016 255 aaPredicted RBP14.82□□□□□ -0.04
LSM1-201ENST00000311351 ACP2P11117 423 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 LAMP1P11279 417 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 ABCE1P61221 599 aaKnown RBP14.82□□□□□ -0.04
LSM1-201ENST00000311351 LRIG3Q6UXM1 1119 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 R3HCC1LQ7Z5L2 792 aaKnown RBP14.82□□□□□ -0.04
LSM1-201ENST00000311351 ANKRD42Q8N9B4 389 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 TNIP2Q8NFZ5 429 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 SLC9A6Q92581 669 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 PGM2Q96G03 612 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 MS4A4EQ96PG1 132 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 SORT1Q99523 831 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 SPOCK3Q9BQ16 436 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 KCNJ16Q9NPI9 418 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 SIRT3Q9NTG7 399 aaPredicted RBP14.82□□□□□ -0.04
LSM1-201ENST00000311351 TAS2R10Q9NYW0 307 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 PPP4R1LQ9P1A2 415 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 TACC2O95359 2948 aa14.82□□□□□ -0.04
LSM1-201ENST00000311351 NKX2-2O95096 273 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 ZWINTO95229 277 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 G6PDP11413 515 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 IGFBP2P18065 325 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 MSX1P28360 303 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 SRD5A2P31213 254 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 MAP3K8P41279 467 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 MFSD12Q6NUT3 480 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 CROCCP2Q86T23 111 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 IFNEQ86WN2 208 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 LACC1Q8IV20 430 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 PM20D2Q8IYS1 436 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 OR4K17Q8NGC6 315 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 GPR151Q8TDV0 419 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 HOXB13Q92826 284 aaPredicted RBP14.81□□□□□ -0.04
LSM1-201ENST00000311351 C16orf58Q96GQ5 468 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 TRIB1Q96RU8 372 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 PAIP2Q9BPZ3 127 aaKnown RBP14.81□□□□□ -0.04
LSM1-201ENST00000311351 TREX2Q9BQ50 279 aaPredicted RBP14.81□□□□□ -0.04
LSM1-201ENST00000311351 YIPF4Q9BSR8 244 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 NTMQ9P121 344 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 ABCG2Q9UNQ0 655 aa14.81□□□□□ -0.04
LSM1-201ENST00000311351 RPH3AQ9Y2J0 694 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms