RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ZC4H2Q9NQZ6 224 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 ZNF624Q9P2J8 865 aaPredicted RBP12.83□□□□□ -0.36
LDLR-201ENST00000252444 MOSPD3O75425 235 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 PIAS2O75928 621 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 ETFAP13804 333 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 CFL1P23528 166 aaKnown RBP12.83□□□□□ -0.36
LDLR-201ENST00000252444 PDE7AQ13946 482 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 TUBA3EQ6PEY2 450 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 IL4I1Q96RQ9 567 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 ZNF337Q9Y3M9 751 aa12.83□□□□□ -0.36
LDLR-201ENST00000252444 TTC3P53804 2025 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 LRIT2A6NDA9 550 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 SCO2O43819 266 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 IDUAP35475 653 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 CPOXP36551 454 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 SUMO3P55854 103 aaPredicted RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 STARD6P59095 220 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 PPP2CBP62714 309 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 PPP2CAP67775 309 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 GINS1Q14691 196 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 TIGD6Q17RP2 521 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 TCTN1Q2MV58 587 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 ZNF628Q5EBL2 1059 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 ZNF613Q6PF04 617 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 ZNF551Q7Z340 670 aaPredicted RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 GPAT4Q86UL3 456 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 THAP4Q8WY91 577 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 MS4A6EQ96DS6 147 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 OR51V1Q9H2C8 321 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 TOR3AQ9H497 397 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 ATP13A2Q9NQ11 1180 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 SIRT5Q9NXA8 310 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 LAMP5Q9UJQ1 280 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 MRPS2Q9Y399 296 aaKnown RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 AGAP14A8MT82 685 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 LINC01387J3KSC0 135 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 YY2O15391 372 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 LATO43561 262 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 CCNIQ14094 377 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 KCTD8Q6ZWB6 473 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 METTL27Q8N6F8 245 aaPredicted RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 TAAR9Q96RI9 348 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 MKRN2Q9H000 416 aaKnown RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 ANKRA2Q9H9E1 313 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 GPN2Q9H9Y4 310 aaPredicted RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 PAQR5Q9NXK6 330 aaPredicted RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 TBC1D29Q9UFV1 150 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 BTBD3Q9Y2F9 522 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 NOP16Q9Y3C1 178 aaKnown RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 PLEKHM1Q9Y4G2 1056 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 CDH10Q9Y6N8 788 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 HMGN2P05204 90 aaKnown RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 GM2AP17900 193 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 POLR2HP52434 150 aaKnown RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 CXCR4P61073 352 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 C17orf67Q0P5P2 114 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 SLC15A4Q8N697 577 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 OR6K6Q8NGW6 343 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 SMPDL3BQ92485 455 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 CNN2Q99439 309 aaKnown RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 DIABLOQ9NR28 239 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 PISDQ9UG56 409 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 PCOLCE2Q9UKZ9 415 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 ERVK-19Q9WJR5 959 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 ARHGAP33O14559 1287 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 NR0B1P51843 470 aaKnown RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 GPNMBQ14956 572 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 TLR1Q15399 786 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 GPR137CQ8N3F9 429 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 ZNF676Q8N7Q3 588 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 WDR20Q8TBZ3 569 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 FAM110BQ8TC76 370 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 SLC35B4Q969S0 331 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 OR6C1Q96RD1 312 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 UTP23Q9BRU9 249 aaKnown RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 SPRTNQ9H040 489 aaPredicted RBP12.82□□□□□ -0.36
LDLR-201ENST00000252444 SATB2Q9UPW6 733 aa12.82□□□□□ -0.36
LDLR-201ENST00000252444 TRBV11-1A0A0K0K1C0 115 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 STATHP02808 62 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 CKMT2P17540 419 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 GRK5P34947 590 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 DCTP40126 519 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 STT3AP46977 705 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 GPR107Q5VW38 600 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 RAET1LQ5VY80 246 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 LIN54Q6MZP7 749 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 TMEM53Q6P2H8 277 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 FBXL6Q8N531 539 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 CORINQ9Y5Q5 1042 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 TMEM202A6NGA9 273 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 SOX1O00570 391 aaPredicted RBP12.81□□□□□ -0.36
LDLR-201ENST00000252444 MTHFD2P13995 350 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 RGS21Q2M5E4 152 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 MYEOVQ96EZ4 313 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 FOLH1BQ9HBA9 442 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 C19orf53Q9UNZ5 99 aaPredicted RBP12.81□□□□□ -0.36
LDLR-201ENST00000252444 NEU3Q9UQ49 428 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 K7EQS6 105 aa12.81□□□□□ -0.36
LDLR-201ENST00000252444 CDC40O60508 579 aaKnown RBP eCLIP12.81□□□□□ -0.36
LDLR-201ENST00000252444 EIF1BO60739 113 aaKnown RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 136.2 ms