RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 FOXO1Q12778 655 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 DUSP8Q13202 625 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 SNTA1Q13424 505 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 KIAA0040Q15053 153 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 GXYLT1Q4G148 440 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 LRIG3Q6UXM1 1119 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 C3P1Q6ZMU1 363 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 Q6ZSR9 355 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 SZRD1Q7Z422 152 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 FGD2Q7Z6J4 655 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 EXOC3L1Q86VI1 746 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 SLC44A2Q8IWA5 706 aaPredicted RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 CHERPQ8IWX8 916 aaKnown RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 FNDC5Q8NAU1 212 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 OR7G2Q8NG99 324 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 OR5M9Q8NGP3 310 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 OR1J4Q8NGS1 313 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 OR2T11Q8NH01 316 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 CLHC1Q8NHS4 586 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.42□□□□□ -1.22
VPS53-214ENST00000572607 CA5BP1Q8WTZ4 195 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 ASB5Q8WWX0 329 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 GFM2Q969S9 779 aaKnown RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 TMBIM1Q969X1 311 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 SDCCAG3Q96C92 435 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 MTERF3Q96E29 417 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 ZBED6CLQ96FA7 236 aaPredicted RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 ZNF764Q96H86 408 aaPredicted RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 TMEM41AQ96HV5 264 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 PKNOX2Q96KN3 472 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 VSTM2LQ96N03 204 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 ZIM3Q96PE6 472 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 TSSK3Q96PN8 268 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 BTBD9Q96Q07 612 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 PAIP2Q9BPZ3 127 aaKnown RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 TUBB1Q9H4B7 451 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 GLIPR2Q9H4G4 154 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 REEP4Q9H6H4 257 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 FOLH1BQ9HBA9 442 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 C3orf14Q9HBI5 128 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 Q9N2J8 555 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 ACKR4Q9NPB9 350 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 ALKBH4Q9NXW9 302 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 TAS2R7Q9NYW3 318 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 SH3BP4Q9P0V3 963 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 EIF3LQ9Y262 564 aaKnown RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 DTX4Q9Y2E6 619 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 GPR55Q9Y2T6 319 aaPredicted RBP7.42□□□□□ -1.22
VPS53-214ENST00000572607 CCL27Q9Y4X3 112 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 LIPGQ9Y5X9 500 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 ACTL7BQ9Y614 415 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 MED13LQ71F56 2210 aa7.42□□□□□ -1.22
VPS53-214ENST00000572607 SETD2Q9BYW2 2564 aaPredicted RBP7.41□□□□□ -1.22
VPS53-214ENST00000572607 TACC2O95359 2948 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 TTC36A6NLP5 189 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 PLOD2O00469 737 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 GNB5O14775 395 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 HNRNPRO43390 633 aaKnown RBP7.41□□□□□ -1.22
VPS53-214ENST00000572607 AKAP10O43572 662 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 TBX19O60806 448 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 PEX11AO75192 247 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 UGT2B11O75310 529 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 LYPLA1O75608 230 aaPredicted RBP7.41□□□□□ -1.22
VPS53-214ENST00000572607 KCNH1O95259 989 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 HOXD4P09016 255 aaPredicted RBP7.41□□□□□ -1.22
VPS53-214ENST00000572607 CELA3AP09093 270 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 IFI6P09912 130 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 RFPL3SP0C7P2 107 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 ARAFP10398 606 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 EPXP11678 715 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 PRPS2P11908 318 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 COX6B1P14854 86 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 GABRA1P14867 456 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 GRK2P25098 689 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 TACR1P25103 407 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 ACVR2AP27037 513 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 HTR1EP28566 365 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 PTGER4P35408 488 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 ETV4P43268 484 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 TRPC1P48995 793 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 CLK3P49761 638 aaKnown RBP7.41□□□□□ -1.22
VPS53-214ENST00000572607 MANFP55145 182 aaKnown RBP7.41□□□□□ -1.22
VPS53-214ENST00000572607 HSPB3Q12988 150 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 MAD2L1Q13257 205 aaPredicted RBP7.41□□□□□ -1.22
VPS53-214ENST00000572607 SF3B4Q15427 424 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS53-214ENST00000572607 CHI3L2Q15782 390 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 DECR1Q16698 335 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 VPS26BQ4G0F5 336 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 RFTN2Q52LD8 501 aaPredicted RBP7.41□□□□□ -1.22
VPS53-214ENST00000572607 HHATQ5VTY9 493 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 BICRALQ6AI39 1079 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 TIGD3Q6B0B8 471 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 SP5Q6BEB4 398 aaPredicted RBP7.41□□□□□ -1.22
VPS53-214ENST00000572607 ANKRD26P1Q6NSI1 321 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 TMEM81Q6P7N7 255 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 FIGNL1Q6PIW4 674 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 ANGPTL8Q6UXH0 198 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 B3GNT6Q6ZMB0 384 aa7.41□□□□□ -1.22
VPS53-214ENST00000572607 LARP4Q71RC2 724 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS53-214ENST00000572607 NATD1Q8N6N6 113 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms