RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 TMPRSS7Q7RTY8 843 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 SMYD1Q8NB12 490 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 B3GNT7Q8NFL0 401 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 DOHHQ9BU89 302 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 Q9N2J8 555 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 DSPPQ9NZW4 1301 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 TMEM229AB2RXF0 380 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 HNRNPRO43390 633 aaKnown RBP28.35■■■□□ 2.13
CTCF-203ENST00000566078 ZIC2O95409 532 aaPredicted RBP28.35■■■□□ 2.13
CTCF-203ENST00000566078 FRRS1Q6ZNA5 592 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 FKBP9P1Q75LS8 142 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 ARMC8Q8IUR7 673 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 C9orf40Q8IXQ3 194 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 LILRA2Q8N149 483 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 NFAM1Q8NET5 270 aaPredicted RBP28.35■■■□□ 2.13
CTCF-203ENST00000566078 LRTOMTQ8WZ04 291 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 LZICQ8WZA0 190 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 BTBD9Q96Q07 612 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 GAL3ST4Q96RP7 486 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 PKP2Q99959 881 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 CHID1Q9BWS9 393 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 SEC14L3Q9UDX4 400 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 WDR45Q9Y484 360 aa28.35■■■□□ 2.13
CTCF-203ENST00000566078 STMND1H3BQB6 276 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 FCMRO60667 390 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 RAD1O60671 282 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 SERPINB7O75635 380 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 MFN2O95140 757 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 CT45A8P0DMV1 189 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 CT45A9P0DMV2 189 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 ETS2P15036 469 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 RBMS1P29558 406 aaKnown RBP28.34■■■□□ 2.13
CTCF-203ENST00000566078 TRHRP34981 398 aaPredicted RBP28.34■■■□□ 2.13
CTCF-203ENST00000566078 GPR143P51810 404 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 RPS18P62269 152 aaKnown RBP28.34■■■□□ 2.13
CTCF-203ENST00000566078 RSPO4Q2I0M5 234 aaPredicted RBP28.34■■■□□ 2.13
CTCF-203ENST00000566078 CT45A2Q5DJT8 189 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 FIGNL1Q6PIW4 674 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 HMGN2P46Q86SG4 172 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 OR4N2Q8NGD1 307 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 ZNF350Q9GZX5 532 aa28.34■■■□□ 2.13
CTCF-203ENST00000566078 C6orf203Q9P0P8 240 aaPredicted RBP28.34■■■□□ 2.13
CTCF-203ENST00000566078 GPR55Q9Y2T6 319 aaPredicted RBP28.34■■■□□ 2.13
CTCF-203ENST00000566078 EXPH5Q8NEV8 1989 aa28.33■■■□□ 2.13
CTCF-203ENST00000566078 LOC102723996A0A087X1L8 192 aa28.33■■■□□ 2.13
CTCF-203ENST00000566078 OR6C76A6NM76 312 aa28.33■■■□□ 2.13
CTCF-203ENST00000566078 STAT5AP42229 794 aa28.33■■■□□ 2.13
CTCF-203ENST00000566078 EBPQ15125 230 aaKnown RBP28.33■■■□□ 2.13
CTCF-203ENST00000566078 TYW3Q6IPR3 259 aaKnown RBP28.33■■■□□ 2.13
CTCF-203ENST00000566078 SLC29A4Q7RTT9 530 aa28.33■■■□□ 2.13
CTCF-203ENST00000566078 AMER2Q8N7J2 671 aa28.33■■■□□ 2.13
CTCF-203ENST00000566078 SPATA5L1Q9BVQ7 753 aa28.33■■■□□ 2.13
CTCF-203ENST00000566078 QRSL1Q9H0R6 528 aaKnown RBP28.33■■■□□ 2.13
CTCF-203ENST00000566078 RIMS3Q9UJD0 308 aa28.33■■■□□ 2.13
CTCF-203ENST00000566078 TCFL5Q9UL49 500 aa28.33■■■□□ 2.13
CTCF-203ENST00000566078 MKLN1Q9UL63 735 aa28.33■■■□□ 2.13
CTCF-203ENST00000566078 FARSAQ9Y285 508 aaKnown RBP28.33■■■□□ 2.13
CTCF-203ENST00000566078 OR10H1Q9Y4A9 318 aa28.33■■■□□ 2.13
CTCF-203ENST00000566078 STX11O75558 287 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 KCNK2O95069 426 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 SEMG1P04279 462 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 ALPPP05187 535 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 RPS15P62841 145 aaKnown RBP28.32■■■□□ 2.12
CTCF-203ENST00000566078 ERMP1Q7Z2K6 904 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 YY1AP1Q9H869 796 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 FBXO34Q9NWN3 711 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 STOML1Q9UBI4 398 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 PPIEQ9UNP9 301 aaKnown RBP28.32■■■□□ 2.12
CTCF-203ENST00000566078 C2orf92A0A1B0GVN3 265 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 IGHEP01854 428 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 FCGR1AP12314 374 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 CD247P20963 164 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 PPICP45877 212 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 RFX3P48380 749 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 KCNJ10P78508 379 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 DNASE1L3Q13609 305 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 APCDD1LQ8NCL9 501 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 RASSF5Q8WWW0 418 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 ADIPOR1Q96A54 375 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 SEMA4CQ9C0C4 833 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 WWTR1Q9GZV5 400 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 CBLCQ9ULV8 474 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 HS3ST3B1Q9Y662 390 aa28.32■■■□□ 2.12
CTCF-203ENST00000566078 PCDH17O14917 1159 aa28.31■■■□□ 2.12
CTCF-203ENST00000566078 PRKNO60260 465 aaPredicted RBP28.31■■■□□ 2.12
CTCF-203ENST00000566078 HOXB6P17509 224 aaKnown RBP28.31■■■□□ 2.12
CTCF-203ENST00000566078 DLSTP36957 453 aa28.31■■■□□ 2.12
CTCF-203ENST00000566078 PCOLCEQ15113 449 aa28.31■■■□□ 2.12
CTCF-203ENST00000566078 HLA-DQA1Q5Y7H0 255 aa28.31■■■□□ 2.12
CTCF-203ENST00000566078 SPPL2AQ8TCT8 520 aa28.31■■■□□ 2.12
CTCF-203ENST00000566078 VMP1Q96GC9 406 aa28.31■■■□□ 2.12
CTCF-203ENST00000566078 LCORQ96JN0 433 aaPredicted RBP28.31■■■□□ 2.12
CTCF-203ENST00000566078 NXF5Q9H1B4 397 aaKnown RBP28.31■■■□□ 2.12
CTCF-203ENST00000566078 MMP11P24347 488 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 FASP25445 335 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 SLC26A5P58743 744 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 GPR68Q15743 365 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 DUSP7Q16829 419 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 CYP27C1Q4G0S4 372 aa28.3■■■□□ 2.12
CTCF-203ENST00000566078 IFI44LQ53G44 452 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms