RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 GPC1P35052 558 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 WNT3P56703 355 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 PSG6Q00889 435 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 ZNHIT3Q15649 155 aaPredicted RBP18.88■□□□□ 0.61
CLN3-219ENST00000565778 GALNTL6Q49A17 601 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 CYP27C1Q4G0S4 372 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 RFTN2Q52LD8 501 aaPredicted RBP18.88■□□□□ 0.61
CLN3-219ENST00000565778 KANK2Q63ZY3 851 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 ANKRD26P1Q6NSI1 321 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 WDR93Q6P2C0 686 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 ZNF551Q7Z340 670 aaPredicted RBP18.88■□□□□ 0.61
CLN3-219ENST00000565778 LACC1Q8IV20 430 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 OR2L13Q8N349 312 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 TNIP2Q8NFZ5 429 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 TSSK3Q96PN8 268 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 TRIB1Q96RU8 372 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 MCCC2Q9HCC0 563 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 TAS2R10Q9NYW0 307 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 SH3BP4Q9P0V3 963 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.88■□□□□ 0.61
CLN3-219ENST00000565778 BAIAP2L1Q9UHR4 511 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 WIF1Q9Y5W5 379 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 V9GYY5 206 aaPredicted RBP18.88■□□□□ 0.61
CLN3-219ENST00000565778 KDM4EB2RXH2 506 aaPredicted RBP18.87■□□□□ 0.61
CLN3-219ENST00000565778 PDPK1O15530 556 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 CYP4B1P13584 511 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 TIMP3P35625 211 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 KRTAP10-9P60411 292 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 RPL38P63173 70 aaKnown RBP18.87■□□□□ 0.61
CLN3-219ENST00000565778 HSPB3Q12988 150 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 GAB1Q13480 694 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 DCST1Q5T197 706 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 NSUN5P2Q63ZY6 315 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 RNF165Q6ZSG1 346 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 ZCCHC23Q6ZST2 131 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 TRIM42Q8IWZ5 723 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 ADGRG4Q8IZF6 3080 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 AGR3Q8TD06 166 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 CAVIN3Q969G5 261 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 PPCDCQ96CD2 204 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 DTNBP1Q96EV8 351 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 CCT7Q99832 543 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 REEP4Q9H6H4 257 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 Q9N2J8 555 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 CBLCQ9ULV8 474 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 FBN2P35556 2912 aa18.87■□□□□ 0.61
CLN3-219ENST00000565778 FREM3P0C091 2139 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 TMEM233B4DJY2 109 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 DVL2O14641 736 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 LSM1O15116 133 aaKnown RBP18.86■□□□□ 0.61
CLN3-219ENST00000565778 SDC1P18827 310 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 CAPN3P20807 821 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 BMP5P22003 454 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 GRK2P25098 689 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 CEACAM8P31997 349 aaPredicted RBP18.86■□□□□ 0.61
CLN3-219ENST00000565778 PRKAG1P54619 331 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 MANFP55145 182 aaKnown RBP18.86■□□□□ 0.61
CLN3-219ENST00000565778 SRYQ05066 204 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 RCAN2Q14206 197 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 DECR1Q16698 335 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 UGT3A2Q3SY77 523 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 CES4AQ5XG92 561 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 ENPP6Q6UWR7 440 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 CLHC1Q8NHS4 586 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 TWIST2Q8WVJ9 160 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 CIDECQ96AQ7 238 aaPredicted RBP18.86■□□□□ 0.61
CLN3-219ENST00000565778 ZNF559Q9BR84 538 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 OR2B2Q9GZK3 357 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 SLC24A3Q9HC58 644 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 FBXL2Q9UKC9 423 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 MRTO4Q9UKD2 239 aaKnown RBP18.86■□□□□ 0.61
CLN3-219ENST00000565778 TMED5Q9Y3A6 229 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 ABCA12Q86UK0 2595 aa18.86■□□□□ 0.61
CLN3-219ENST00000565778 PIP5K1BO14986 540 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 PRPS2P11908 318 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 CPN1P15169 458 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 CREB1P16220 341 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 SRD5A2P31213 254 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 GABRA3P34903 492 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 RFX3P48380 749 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 MYBPHQ13203 477 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 IFNEQ86WN2 208 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 NAXEQ8NCW5 288 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 OR4K17Q8NGC6 315 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 ZFP28Q8NHY6 868 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 ZPLD1Q8TCW7 415 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 FCRL1Q96LA6 429 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 CALHM2Q9HA72 323 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 SDHAF3Q9NRP4 125 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 ZNF629Q9UEG4 869 aaPredicted RBP18.85■□□□□ 0.61
CLN3-219ENST00000565778 DKKL1Q9UK85 242 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 ITGB1BP2Q9UKP3 347 aa18.85■□□□□ 0.61
CLN3-219ENST00000565778 MYO9AB2RTY4 2548 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 DCHS2Q6V1P9 2916 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 CD8B2A6NJW9 211 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 SCO2O43819 266 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 PEX11AO75192 247 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 PSMG1O95456 288 aa18.84■□□□□ 0.61
CLN3-219ENST00000565778 TCEA1P23193 301 aaKnown RBP18.84■□□□□ 0.61
CLN3-219ENST00000565778 DPP4P27487 766 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms