RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	NPIPB8	E9PQR5	432 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	PLOD2	O00469	737 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	SEC22B	O75396	215 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	CT45A8	P0DMV1	189 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	CT45A9	P0DMV2	189 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	MAPK1	P28482	360 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	RPL3	P39023	403 aa	Known RBP	12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	ASMT	P46597	345 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	SORD	Q00796	357 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	IFFO1	Q0D2I5	559 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	GAB1	Q13480	694 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	EIPR1	Q53HC9	387 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	CT45A2	Q5DJT8	189 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	NOXRED1	Q6NXP6	359 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	SLC44A2	Q8IWA5	706 aa	Predicted RBP	12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	SFXN2	Q96NB2	322 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	NODAL	Q96S42	347 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	SFXN3	Q9BWM7	321 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	LRTM1	Q9HBL6	345 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	PPP4R1L	Q9P1A2	415 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	ITGB1BP2	Q9UKP3	347 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	C19orf53	Q9UNZ5	99 aa	Predicted RBP	12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	SLC6A5	Q9Y345	797 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	L3MBTL1	Q9Y468	752 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	NCKAP5	O14513	1909 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	POLQ	O75417	2590 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	OTOG	Q6ZRI0	2925 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	FREM3	P0C091	2139 aa		12.83	□□□□□ -0.36
TPM1-223	ENST00000560445	FBN2	P35556	2912 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	TMEM114	B3SHH9	223 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	UBFD1	O14562	309 aa	Known RBP	12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	AZIN1	O14977	448 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	PDPK1	O15530	556 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	TSPAN2	O60636	221 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	TRIM13	O60858	407 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	KCNH1	O95259	989 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	SHBG	P04278	402 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	JUN	P05412	331 aa	Known RBP	12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	GRK2	P25098	689 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	EVI2B	P34910	448 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	GPC1	P35052	558 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	SERPINB5	P36952	375 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	DGKQ	P52824	942 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	DIO3	P55073	304 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	DSCR4	P56555	118 aa	Predicted RBP	12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	DUSP2	Q05923	314 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	BCL2A1	Q16548	175 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	FLYWCH1	Q4VC44	716 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	OR2A2	Q6IF42	318 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	FAM71E1	Q6IPT2	247 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	R3HCC1L	Q7Z5L2	792 aa	Known RBP	12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	YRDC	Q86U90	279 aa	Known RBP	12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	OR2L13	Q8N349	312 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	LRRN4CL	Q8ND94	238 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	OR7G2	Q8NG99	324 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	CEP70	Q8NHQ1	597 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	NINJ1	Q92982	152 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	WNT2B	Q93097	391 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	ZBED6CL	Q96FA7	236 aa	Predicted RBP	12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	WDYHV1	Q96HA8	205 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	APOPT1	Q96IL0	206 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	PIGM	Q9H3S5	423 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	GALNT9	Q9HCQ5	603 aa		12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	FAM120C	Q9NX05	1096 aa	Known RBP	12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	POLR3H	Q9Y535	204 aa	Predicted RBP	12.82	□□□□□ -0.36
TPM1-223	ENST00000560445	TLDC2	A0PJX2	215 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	EEF1E1-BLOC1S5	C9J1V9	151 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	EEF1E1	O43324	174 aa	Known RBP	12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	SOX30	O94993	753 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	HSPA4L	O95757	839 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	CRH	P06850	196 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	TMIGD3	P0DMS9	266 aa	Predicted RBP	12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	DPP4	P27487	766 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	HPCAL1	P37235	193 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	MC3R	P41968	323 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	CORO7	P57737	925 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	SLC18A2	Q05940	514 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	FGFBP1	Q14512	234 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	FAM180B	Q6P0A1	224 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	TMEM107	Q6UX40	140 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	LRIG3	Q6UXM1	1119 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	MEIOB	Q8N635	442 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	NATD1	Q8N6N6	113 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	WDSUB1	Q8N9V3	476 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	TNIP2	Q8NFZ5	429 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	PPCDC	Q96CD2	204 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	MTERF3	Q96E29	417 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	AMDHD1	Q96NU7	426 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	UCN2	Q96RP3	112 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	DNAJB12	Q9NXW2	375 aa	Known RBP	12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	CBLC	Q9ULV8	474 aa		12.81	□□□□□ -0.36
TPM1-223	ENST00000560445	PDZD2	O15018	2839 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	TUBAL3	A6NHL2	446 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	NPHS1	O60500	1241 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	TBX19	O60806	448 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	NUDT17	P0C025	328 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	PEPD	P12955	493 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	LCN1	P31025	176 aa		12.8	□□□□□ -0.36
TPM1-223	ENST00000560445	PTGDS	P41222	190 aa		12.8	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms