RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TSPAN19P0C672 248 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 JUNDP17535 347 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 HNRNPA2B1P22626 353 aaKnown RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 NOS3P29474 1203 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 SOX18P35713 384 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 KHKP50053 298 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 HCCSP53701 268 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 PCBP4P57723 403 aaKnown RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 BTG2P78543 158 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 EEF1A2Q05639 463 aaKnown RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 STX4Q12846 297 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 KEAP1Q14145 624 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 MAPK14Q16539 360 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 IRAK1BP1Q5VVH5 260 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 C22orf42Q6IC83 251 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 PGBD2Q6P3X8 592 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 PRSS48Q7RTY5 328 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 OOSP2Q86WS3 158 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 DNAJC5GQ8N7S2 189 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 OR51G2Q8NGK0 314 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF420Q8TAQ5 688 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 HCAR2Q8TDS4 363 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 HPS1Q92902 700 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF354BQ96LW1 612 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF576Q9H609 170 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 DDX31Q9H8H2 851 aaKnown RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 KLHL28Q9NXS3 571 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 H2AFY2Q9P0M6 372 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 POU2F3Q9UKI9 436 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 IFT52Q9Y366 437 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 PTPRSQ13332 1948 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 PI4KAP42356 2102 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 TRAV27A0A087WT01 109 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 A0A0A6YYD5 115 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 SH3PXD2BA1X283 911 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 C17orf51A8MQB3 221 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 A8MVJ9 347 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 SOCS6O14544 535 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 KHNYNO15037 678 aaKnown RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 EMC8O43402 210 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 HRO43593 1189 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 PLRG1O43660 514 aaKnown RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 PDE9AO76083 593 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 CSF2P04141 144 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 CT62P0C5K7 136 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 PEPDP12955 493 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 IFI30P13284 250 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 F3P13726 295 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 TLX1P31314 330 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 AKT2P31751 481 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 OR1D4P47884 311 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 RXRGP48443 463 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 HHEXQ03014 270 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF91Q05481 1191 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 NFATC4Q14934 902 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 ZIC1Q15915 447 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 CRTC2Q53ET0 693 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 C1orf189Q5VU69 101 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 DGAT2L6Q6ZPD8 337 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 PLEKHG7Q6ZR37 379 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 RNF44Q7L0R7 432 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 NRROSQ86YC3 692 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 ANKRD13BQ86YJ7 626 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 SLC44A3Q8N4M1 653 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 CSNK1A1LQ8N752 337 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 OR4C15Q8NGM1 316 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 OR5M3Q8NGP4 307 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 TEX47Q8TBZ9 253 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 THAP3Q8WTV1 239 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 PMEPA1Q969W9 287 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 TBC1D20Q96BZ9 403 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 MAP3K3Q99759 626 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 NRSN2Q9GZP1 204 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 TMEM38AQ9H6F2 299 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 CCDC86Q9H6F5 360 aaKnown RBP5.24□□□□□ -1.57
LIMA1-215ENST00000552823 HMG20AQ9NP66 347 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 EVA1BQ9NVM1 165 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 QPCTLQ9NXS2 382 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 COMMD3Q9UBI1 195 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 SLC7A7Q9UM01 511 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 A4GNTQ9UNA3 340 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 MAPRE3Q9UPY8 281 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 SLC17A4Q9Y2C5 497 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 OR10H1Q9Y4A9 318 aa5.24□□□□□ -1.57
LIMA1-215ENST00000552823 COL4A3Q01955 1670 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 TP53BP1Q12888 1972 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 OR2A25A4D2G3 310 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 PLD2O14939 933 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 PROM1O43490 865 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 SSX4O60224 188 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 EPPINO95925 133 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 OSMP13725 252 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 CELP19835 753 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 GRPRP30550 384 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 IFNA8P32881 189 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 GIPRP48546 466 aa5.23□□□□□ -1.57
LIMA1-215ENST00000552823 CSNK1EP49674 416 aaKnown RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 EIF2B2P49770 351 aaKnown RBP5.23□□□□□ -1.57
LIMA1-215ENST00000552823 PCBP3P57721 371 aaKnown RBP5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms