RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PRIMA1Q86XR5 153 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 SAMD14Q8IZD0 417 aaPredicted RBP12.26□□□□□ -0.45
SS18-204ENST00000539244 C1orf52Q8N6N3 182 aaKnown RBP12.26□□□□□ -0.45
SS18-204ENST00000539244 FADS6Q8N9I5 356 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 PPP1R14CQ8TAE6 165 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 ZNF483Q8TF39 744 aaPredicted RBP12.26□□□□□ -0.45
SS18-204ENST00000539244 NUDT8Q8WV74 236 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 PGM2Q96G03 612 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 Q96MF0 132 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 KLHL28Q9NXS3 571 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 ELOVL5Q9NYP7 299 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 HEY2Q9UBP5 337 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 MCM8Q9UJA3 840 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 ZNF225Q9UK10 706 aa12.26□□□□□ -0.45
SS18-204ENST00000539244 HEATR5AQ86XA9 2040 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 PPP6CO00743 305 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 EMC8O43402 210 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 PLOD3O60568 738 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 TNFRSF21O75509 655 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 SMNDC1O75940 238 aaKnown RBP eCLIP12.25□□□□□ -0.45
SS18-204ENST00000539244 CD8BP10966 210 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 IL12BP29460 328 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 PHBP35232 272 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 KRT20P35900 424 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 UGT2B10P36537 528 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 ALDH9A1P49189 494 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 CLDN15P56746 228 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 OCRLQ01968 901 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 FGFBP1Q14512 234 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 GANABQ14697 944 aaKnown RBP12.25□□□□□ -0.45
SS18-204ENST00000539244 GUSBP1Q15486 140 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 OR5M10Q6IEU7 315 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 LARP4Q71RC2 724 aaKnown RBP eCLIP12.25□□□□□ -0.45
SS18-204ENST00000539244 RPS27LQ71UM5 84 aaKnown RBP12.25□□□□□ -0.45
SS18-204ENST00000539244 ZNF572Q7Z3I7 529 aaPredicted RBP12.25□□□□□ -0.45
SS18-204ENST00000539244 P4HA3Q7Z4N8 544 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 YTHDF3Q7Z739 585 aaKnown RBP12.25□□□□□ -0.45
SS18-204ENST00000539244 RELL1Q8IUW5 271 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 CCDC116Q8IYX3 515 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 IGFBPL1Q8WX77 278 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 CAVIN3Q969G5 261 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 CCL19Q99731 98 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 MRPL57Q9BQC6 102 aaKnown RBP12.25□□□□□ -0.45
SS18-204ENST00000539244 SLC39A3Q9BRY0 314 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 MED18Q9BUE0 208 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 STMN4Q9H169 189 aaPredicted RBP12.25□□□□□ -0.45
SS18-204ENST00000539244 ANKRA2Q9H9E1 313 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 RNF122Q9H9V4 155 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 GRPEL1Q9HAV7 217 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 FOLH1BQ9HBA9 442 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 ZDHHC18Q9NUE0 388 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 VPS29Q9UBQ0 182 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 TRPS1Q9UHF7 1281 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 ZNF175Q9Y473 711 aa12.25□□□□□ -0.45
SS18-204ENST00000539244 LINC01387J3KSC0 135 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 ROS1P08922 2347 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 SBK3P0C264 359 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 CTAGE8P0CG41 777 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 POU2F1P14859 743 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 EVI2BP34910 448 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 CDH13P55290 713 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 EEFSECP57772 596 aaKnown RBP12.24□□□□□ -0.45
SS18-204ENST00000539244 MRPS22P82650 360 aaKnown RBP12.24□□□□□ -0.45
SS18-204ENST00000539244 PSG6Q00889 435 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 CSTF3Q12996 717 aaKnown RBP12.24□□□□□ -0.45
SS18-204ENST00000539244 ERCC6LQ2NKX8 1250 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 CHMP1BQ7LBR1 199 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 CTAGE4Q8IX94 777 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 TMEM151AQ8N4L1 468 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 MEIOBQ8N635 442 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 CNEP1R1Q8N9A8 125 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 OR2M3Q8NG83 312 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 OR4K17Q8NGC6 315 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 OR9A2Q8NGT5 310 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 FIG4Q92562 907 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 KAT2AQ92830 837 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 PIK3IP1Q96FE7 263 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 FAM111AQ96PZ2 611 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 HBEGFQ99075 208 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 GSX2Q9BZM3 304 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 SHCBP1LQ9BZQ2 653 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 OPN3Q9H1Y3 402 aaPredicted RBP12.24□□□□□ -0.45
SS18-204ENST00000539244 MRPL46Q9H2W6 279 aaKnown RBP12.24□□□□□ -0.45
SS18-204ENST00000539244 PCNX3Q9H6A9 2034 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 NINJ2Q9NZG7 142 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 PPP4R1LQ9P1A2 415 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 ZANQ9Y493 2812 aa12.24□□□□□ -0.45
SS18-204ENST00000539244 A8MT66 165 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 C16orf97H3BN30 126 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 NME6O75414 186 aaPredicted RBP12.23□□□□□ -0.45
SS18-204ENST00000539244 IL3P08700 152 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 PAX1P15863 534 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 SERPINB9P50453 376 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 RAE1P78406 368 aaKnown RBP12.23□□□□□ -0.45
SS18-204ENST00000539244 HEPACAMQ14CZ8 416 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 UBAP2Q5T6F2 1119 aaKnown RBP12.23□□□□□ -0.45
SS18-204ENST00000539244 OR7G2Q8NG99 324 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 OR4N2Q8NGD1 307 aa12.23□□□□□ -0.45
SS18-204ENST00000539244 EFHD2Q96C19 240 aaPredicted RBP12.23□□□□□ -0.45
SS18-204ENST00000539244 C11orf24Q96F05 449 aaPredicted RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms