RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 CLEC2DQ9UHP7 191 aa10.28□□□□□ -0.76
CLSTN3-207ENST00000537408 NPTNQ9Y639 398 aa10.28□□□□□ -0.76
CLSTN3-207ENST00000537408 MTCH2Q9Y6C9 303 aa10.28□□□□□ -0.76
CLSTN3-207ENST00000537408 A0A1W2PRU2 124 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 RFXANKO14593 260 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 ECI2O75521 394 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 AQP8O94778 261 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 ALPIP09923 528 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 CXCL2P19875 107 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 RBMS1P29558 406 aaKnown RBP10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 HOXC13P31276 330 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 SPAM1P38567 509 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 CDH12P55289 794 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 SEC61A1P61619 476 aaKnown RBP10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 DHODHQ02127 395 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 PEA15Q15121 130 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 AKIRIN2Q53H80 203 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 FBXO48Q5FWF7 155 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 SLC22A10Q63ZE4 541 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 CBLL1Q75N03 491 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 C16orf59Q7L2K0 433 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 MON1AQ86VX9 555 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 CBLN2Q8IUK8 224 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 SPATA22Q8NHS9 363 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 CLP1Q92989 425 aaKnown RBP10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 S100PBPQ96BU1 408 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 ATF6BQ99941 703 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 BEX1Q9HBH7 125 aa10.27□□□□□ -0.76
CLSTN3-207ENST00000537408 ARID2Q68CP9 1835 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 IRGMA1A4Y4 181 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 MCRIP1C9JLW8 97 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 TMEM189-UBE2V1I3L0A0 370 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 TGM5O43548 720 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 HPP00738 406 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 RD3LP0DJH9 198 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 GABRA1P14867 456 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 CPEP16870 476 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 RAB4AP20338 218 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 FDXRP22570 491 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 ITPKAP23677 461 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 SLC1A3P43003 542 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 ECH1Q13011 328 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 PDGFRLQ15198 375 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 SGO1Q5FBB7 561 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 UBXN11Q5T124 520 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 LYPD4Q6UWN0 246 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 RTN4RL1Q86UN2 441 aaPredicted RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 LRRC28Q86X40 367 aaPredicted RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 MARCH9Q86YJ5 346 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 UBALD2Q8IYN6 164 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 CCDC116Q8IYX3 515 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 IL4I1Q96RQ9 567 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 ATOH8Q96SQ7 321 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 NT5MQ9NPB1 228 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 LSM2Q9Y333 95 aaKnown RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 TRAPPC13A5PLN9 417 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 SCN2BO60939 215 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 CDC123O75794 336 aaPredicted RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 RAB36O95755 333 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 UBBP0CG47 229 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 UBCP0CG48 685 aaKnown RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 ZNF8P17098 575 aaPredicted RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 RGS4P49798 205 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 RPS27AP62979 156 aaKnown RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 UBA52P62987 128 aaKnown RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 PITPNAQ00169 270 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 TDGQ13569 410 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 HTR4Q13639 388 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 UPP1Q16831 310 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 SFRP5Q5T4F7 317 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 IDNKQ5T6J7 187 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 TP53INP2Q8IXH6 220 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 ZSCAN1Q8NBB4 408 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 OR52J3Q8NH60 311 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 CNOT9Q92600 299 aaKnown RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 NELL1Q92832 810 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 GTPBP3Q969Y2 492 aaKnown RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 CHFRQ96EP1 664 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 FCRL5Q96RD9 977 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 TMPRSS13Q9BYE2 586 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 TMPRSS5Q9H3S3 457 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 TEX10Q9NXF1 929 aaPredicted RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 GDE1Q9NZC3 331 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 OR14I1A6ND48 311 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 OR6C68A6NDL8 312 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 GPR31O00270 319 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 TLR5O60602 858 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 S1PR4O95977 384 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 PRDX3P30048 256 aaKnown RBP10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 BLOC1S1P78537 153 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 TAF10Q12962 218 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 RAET1GQ6H3X3 334 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 Q6ZSR9 355 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 SERPINA11Q86U17 422 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 LDLRAD3Q86YD5 345 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 MSRB3Q8IXL7 192 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 GATAD2BQ8WXI9 593 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 TSSK6Q9BXA6 273 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 ZBP1Q9H171 429 aa10.27□□□□□ -0.77
CLSTN3-207ENST00000537408 GALPQ9UBC7 116 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms