RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 C1DQ13901 141 aaKnown RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 RNASE12Q5GAN4 147 aaKnown RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 TMEM107Q6UX40 140 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 ALKAL2Q6UX46 152 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 ZNF621Q6ZSS3 439 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 NLRC3Q7RTR2 1065 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 OR2T4Q8NH00 348 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 SFXN2Q96NB2 322 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 ASB16Q96NS5 453 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 PIP5K1AQ99755 562 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 PITHD1Q9GZP4 211 aaPredicted RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 ESRP2Q9H6T0 727 aaKnown RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 TMEM45AQ9NWC5 275 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 ERVK-19Q9WJR5 959 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 SPIN1Q9Y657 262 aaPredicted RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 HELZP42694 1942 aaKnown RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 RFXAPO00287 272 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 NFATC1O95644 943 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 C6P13671 934 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 CNR2P34972 360 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 PPP3R1P63098 170 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 DOC2AQ14183 400 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 PTGES3Q15185 160 aaKnown RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 MICAQ29983 383 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 VMACQ2NL98 169 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 TANGO2Q6ICL3 276 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 BCDIN3DQ7Z5W3 292 aaKnown RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 CLDN22Q8N7P3 220 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 SMARCD2Q92925 531 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 PKP4Q99569 1192 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 DPYSL5Q9BPU6 564 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 ZNF436Q9C0F3 470 aaPredicted RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 MCOLN1Q9GZU1 580 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 SPRTNQ9H040 489 aaPredicted RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 STOX2Q9P2F5 926 aaPredicted RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 LALBAP00709 142 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 SDC1P18827 310 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 ATP12AP54707 1039 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 IKZF1Q13422 519 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 CAMK2DQ13557 499 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 HNRNPA1L2Q32P51 320 aaKnown RBP13.16□□□□□ -0.3
LIG1-203ENST00000536218 C3P1Q6ZMU1 363 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 RTL10Q7L3V2 364 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 ETFBKMTQ8IXQ9 262 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 CCDC36Q8IYA8 594 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 GPR156Q8NFN8 814 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 OR4D10Q8NGI6 311 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 WFIKKN2Q8TEU8 576 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 DTD2Q96FN9 168 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 WBP1Q96G27 269 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 MS4A3Q96HJ5 214 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 CLMPQ9H6B4 373 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 KIF25Q9UIL4 384 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 TRANK1O15050 2925 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 KCNE1BA0A087WTH5 132 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 TEX13CA0A0J9YWL9 993 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 C5orf67F2Z3F1 127 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 DNASE2O00115 360 aaPredicted RBP13.16□□□□□ -0.3
LIG1-203ENST00000536218 SPINT1O43278 529 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 TPST2O60704 377 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 FGL2Q14314 439 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 OPCMLQ14982 345 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 EXOC3L2Q2M3D2 409 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 MOSPD2Q8NHP6 518 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 SUSD6Q92537 303 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 NUS1Q96E22 293 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 PDXPQ96GD0 296 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 LRIG1Q96JA1 1093 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 OR4K3Q96R72 315 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 DPH7Q9BTV6 452 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 BCL2L14Q9BZR8 327 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 CLCA2Q9UQC9 943 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 POFUT2Q9Y2G5 429 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 TRBV5-3A0A0A0MS03 114 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 TSPAN11A1L157 253 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 SGCEO43556 437 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 CPSF4O95639 269 aaKnown RBP13.16□□□□□ -0.3
LIG1-203ENST00000536218 RB1P06400 928 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 ADRB3P13945 408 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 ENGP17813 658 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 ITGB7P26010 798 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 LCN1P31025 176 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 ERVK-25P63136 954 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 SP140Q13342 867 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 B3GLCTQ6Y288 498 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 OVCH2Q7RTZ1 564 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 SYT12Q8IV01 421 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 EPYCQ99645 322 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 NT5DC2Q9H857 520 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 SGK2Q9HBY8 427 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 CD93Q9NPY3 652 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 NDUFB11Q9NX14 153 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 GULP1Q9UBP9 304 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 PPT2Q9UMR5 302 aa13.16□□□□□ -0.3
LIG1-203ENST00000536218 TP53BP1Q12888 1972 aaPredicted RBP13.15□□□□□ -0.3
LIG1-203ENST00000536218 CLIC1O00299 241 aa13.15□□□□□ -0.3
LIG1-203ENST00000536218 SUV39H1O43463 412 aa13.15□□□□□ -0.3
LIG1-203ENST00000536218 LANCL1O43813 399 aa13.15□□□□□ -0.3
LIG1-203ENST00000536218 PRLHRP49683 370 aa13.15□□□□□ -0.3
LIG1-203ENST00000536218 MEF2AQ02078 507 aaPredicted RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms