RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 CASTOR2A6NHX0 329 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 FPGTO14772 594 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 EXTL3O43909 919 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 TRIM3O75382 744 aaPredicted RBP5.03□□□□□ -1.6
PCF11-202ENST00000528336 RPS6KA5O75582 802 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 CDK2AP2O75956 126 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 OR6A2O95222 327 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 LGI1O95970 557 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 GSRP00390 522 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 ZNF883P0CG24 379 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 ATP6V1C1P21283 382 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 PRDX6P30041 224 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 PLTPP55058 493 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 CLDN8P56748 225 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 HILS1P60008 231 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 IRX1P78414 480 aaPredicted RBP5.03□□□□□ -1.6
PCF11-202ENST00000528336 NONOQ15233 471 aaKnown RBP eCLIP5.03□□□□□ -1.6
PCF11-202ENST00000528336 NPTX1Q15818 432 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 SLC15A2Q16348 729 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 AANATQ16613 207 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 XKR6Q5GH73 641 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 LDLRAP1Q5SW96 308 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 PIP5KL1Q5T9C9 394 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 OR4A47Q6IF82 309 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 UGT3A1Q6NUS8 523 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 CYB5D1Q6P9G0 228 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 ZNF497Q6ZNH5 498 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 KLHDC1Q8N7A1 406 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 SLC2A14Q8TDB8 520 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 SENP8Q96LD8 212 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 C10orf90Q96M02 699 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 C12orf66Q96MD2 445 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 SYT15Q9BQS2 421 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 ALG12Q9BV10 488 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 CLEC7AQ9BXN2 247 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 GFRA4Q9GZZ7 299 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 ACTR8Q9H981 624 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 COG4Q9H9E3 785 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 ZCCHC3Q9NUD5 404 aaKnown RBP5.03□□□□□ -1.6
PCF11-202ENST00000528336 SPATA7Q9P0W8 599 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 IL20RAQ9UHF4 553 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 CRLS1Q9UJA2 301 aa5.03□□□□□ -1.6
PCF11-202ENST00000528336 EXOGQ9Y2C4 368 aaKnown RBP5.03□□□□□ -1.6
PCF11-202ENST00000528336 VIRMAQ69YN4 1812 aaKnown RBP5.02□□□□□ -1.61
PCF11-202ENST00000528336 SF3B1O75533 1304 aaKnown RBP eCLIP5.02□□□□□ -1.61
PCF11-202ENST00000528336 ZBED9Q6R2W3 1325 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 H3BMM5 538 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 SLC28A1O00337 649 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 ARHGEF9O43307 516 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 SNX3O60493 162 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 STBD1O95210 358 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 UGT2B4P06133 528 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 FHP07954 510 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 PABPC4LP0CB38 370 aaKnown RBP5.02□□□□□ -1.61
PCF11-202ENST00000528336 OR8G3PP0DMU2 310 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 ODC1P11926 461 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 EPCAMP16422 314 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 TNNI3P19429 210 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 NCF2P19878 526 aaPredicted RBP5.02□□□□□ -1.61
PCF11-202ENST00000528336 CD1BP29016 333 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 ADRA1AP35348 466 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 CRYBB1P53674 252 aaPredicted RBP5.02□□□□□ -1.61
PCF11-202ENST00000528336 KRTAP10-6P60371 365 aaPredicted RBP5.02□□□□□ -1.61
PCF11-202ENST00000528336 DRP2Q13474 957 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 CHRNA6Q15825 494 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 GPAT3Q53EU6 434 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 PDLIM3Q53GG5 364 aaPredicted RBP5.02□□□□□ -1.61
PCF11-202ENST00000528336 ERICH5Q6P6B1 374 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 DEGS2Q6QHC5 323 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 ASPGQ86U10 573 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 CCDC60Q8IWA6 550 aaPredicted RBP5.02□□□□□ -1.61
PCF11-202ENST00000528336 GPR137CQ8N3F9 429 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 RYBPQ8N488 228 aaPredicted RBP5.02□□□□□ -1.61
PCF11-202ENST00000528336 COMMD1Q8N668 190 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 ACMSDQ8TDX5 336 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 TSEN15Q8WW01 171 aaKnown RBP5.02□□□□□ -1.61
PCF11-202ENST00000528336 FAM46BQ96A09 425 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 RASL10BQ96S79 203 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 NPY6RQ99463 290 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 GTPBP2Q9BX10 602 aaKnown RBP5.02□□□□□ -1.61
PCF11-202ENST00000528336 FTHL17Q9BXU8 183 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 SPACA1Q9HBV2 294 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 GSN-AS1Q9NRJ2 163 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 NUDT15Q9NV35 164 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 ANGPTL2Q9UKU9 493 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 USP16Q9Y5T5 823 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 C4BP0C0L5 1744 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 TJP1Q07157 1748 aa5.02□□□□□ -1.61
PCF11-202ENST00000528336 COL5A3P25940 1745 aaPredicted RBP5.01□□□□□ -1.61
PCF11-202ENST00000528336 TRAV6A0A075B6T7 132 aa5.01□□□□□ -1.61
PCF11-202ENST00000528336 IGKV3D-15A0A087WSY6 115 aa5.01□□□□□ -1.61
PCF11-202ENST00000528336 A0A0U1RRA0 63 aa5.01□□□□□ -1.61
PCF11-202ENST00000528336 SNURFLB1AK76 121 aa5.01□□□□□ -1.61
PCF11-202ENST00000528336 NTN3O00634 580 aaPredicted RBP5.01□□□□□ -1.61
PCF11-202ENST00000528336 FLRT2O43155 660 aa5.01□□□□□ -1.61
PCF11-202ENST00000528336 DNAJB6O75190 326 aa5.01□□□□□ -1.61
PCF11-202ENST00000528336 NIPSNAP2O75323 286 aa5.01□□□□□ -1.61
PCF11-202ENST00000528336 CLDN1O95832 211 aa5.01□□□□□ -1.61
PCF11-202ENST00000528336 C9P02748 559 aa5.01□□□□□ -1.61
PCF11-202ENST00000528336 SLC2A3P11169 496 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms