RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ANKRD28O15084 1053 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 ACOX3O15254 700 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 CFLARO15519 480 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 S100A3P33764 101 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 SOX18P35713 384 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 SOX3P41225 446 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 TMED10P49755 219 aaKnown RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 EMDP50402 254 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 CDK9P50750 372 aaKnown RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 NR0B1P51843 470 aaKnown RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 UFM1P61960 85 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 PSPHP78330 225 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 IRX1P78414 480 aaPredicted RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 PRR5P85299 388 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 TLE4Q04727 773 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 DUSP8Q13202 625 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 CMPK2Q5EBM0 449 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 PIGGQ5H8A4 983 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 ANXA8L1Q5VT79 327 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 ARHGAP11AQ6P4F7 1023 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 C16orf47Q6ZP98 133 aaPredicted RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 SZRD1Q7Z422 152 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 MDGA2Q7Z553 956 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 CDH24Q86UP0 819 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 MIER2Q8N344 545 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 OR2L13Q8N349 312 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 ZNF441Q8N8Z8 693 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 ZFP62Q8NB50 900 aaPredicted RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 PSD4Q8NDX1 1056 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 OR8J2Q8NGG1 315 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 ADIPOR1Q96A54 375 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 MOAP1Q96BY2 351 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 THOC1Q96FV9 657 aaKnown RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 LCORQ96JN0 433 aaPredicted RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 MARK4Q96L34 752 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 MS4A4EQ96PG1 132 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 ITPAQ9BY32 194 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 ENKD1Q9H0I2 346 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 TP63Q9H3D4 680 aaPredicted RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 FOLH1BQ9HBA9 442 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 TIMMDC1Q9NPL8 285 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 SDR39U1Q9NRG7 319 aaPredicted RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 FAM120CQ9NX05 1096 aaKnown RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 PCDHGB4Q9UN71 923 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 C19orf53Q9UNZ5 99 aaPredicted RBP9.32□□□□□ -0.92
VPS28-204ENST00000526054 TRIM33Q9UPN9 1127 aa9.32□□□□□ -0.92
VPS28-204ENST00000526054 HCFC1P51610 2035 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 MED13LQ71F56 2210 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 A0A0G2JND7 137 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 GMNCA6NCL1 334 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 FRG2CA6NGY1 282 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 TTC36A6NLP5 189 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 FAM90A27PA6NNH2 459 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 ACOT7O00154 380 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 UPK1AO00322 258 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 RNASET2O00584 256 aaKnown RBP9.31□□□□□ -0.92
VPS28-204ENST00000526054 EMC8O43402 210 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 ERN1O75460 977 aaKnown RBP9.31□□□□□ -0.92
VPS28-204ENST00000526054 SLC22A3O75751 556 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 OR6B1O95007 311 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 NADKO95544 446 aaPredicted RBP9.31□□□□□ -0.92
VPS28-204ENST00000526054 C6orf47O95873 294 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 CAPN3P20807 821 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 EFNA1P20827 205 aaPredicted RBP9.31□□□□□ -0.92
VPS28-204ENST00000526054 SOAT1P35610 550 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 PPICP45877 212 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 MRPL19P49406 292 aaKnown RBP9.31□□□□□ -0.92
VPS28-204ENST00000526054 KRTAP10-9P60411 292 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 LRRC74AQ0VAA2 488 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 ZNHIT3Q15649 155 aaPredicted RBP9.31□□□□□ -0.92
VPS28-204ENST00000526054 NNATQ16517 81 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 FAM174BQ3ZCQ3 159 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 SPDYE7PQ495Y7 208 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 SPANXN4Q5MJ08 99 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 OR4F3Q6IEY1 312 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 IL20RBQ6UXL0 311 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 TMEM64Q6YI46 380 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 RTL4Q6ZR62 310 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 MARVELD2Q8N4S9 558 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 GOLM1Q8NBJ4 401 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 SIMC1Q8NDZ2 872 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 NUP43Q8NFH3 380 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 OR56A1Q8NGH5 318 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 RFWD2Q8NHY2 731 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 SFXN5Q8TD22 340 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 ASB5Q8WWX0 329 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 SPACA9Q96E40 222 aaPredicted RBP9.31□□□□□ -0.92
VPS28-204ENST00000526054 HSPBAP1Q96EW2 488 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 CHMP6Q96FZ7 201 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 SGCZQ96LD1 299 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 VSTM2LQ96N03 204 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 RILPQ96NA2 401 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 BTBD9Q96Q07 612 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 NSRP1Q9H0G5 558 aaKnown RBP9.31□□□□□ -0.92
VPS28-204ENST00000526054 NXF5Q9H1B4 397 aaKnown RBP9.31□□□□□ -0.92
VPS28-204ENST00000526054 ANKRA2Q9H9E1 313 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 MCCC2Q9HCC0 563 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 ZCCHC3Q9NUD5 404 aaKnown RBP9.31□□□□□ -0.92
VPS28-204ENST00000526054 DTX4Q9Y2E6 619 aa9.31□□□□□ -0.92
VPS28-204ENST00000526054 SNX8Q9Y5X2 465 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms