RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 FRG2CA6NGY1 282 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LILRA5A6NI73 299 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NKX6-3A6NJ46 265 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 A6NJ64 397 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SHISA7A6NL88 538 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SMIM23A6NLE4 172 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 C2CD4BA6NLJ0 364 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2AG2A6NM03 316 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRPC5OSA6NMA1 111 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRIQ3A6PVS8 624 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERI2A8K979 691 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 A8MUA0 341 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 A8MXQ7 604 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 VWC2LB2RUY7 222 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 C17orf105B2RV13 164 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 C2CD4DB7Z1M9 353 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HHLA1C9JL84 531 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 E7ESA3 106 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 E7EWF7 191 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLCO1B7G3V0H7 640 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HAS3O00219 553 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TULP2O00295 520 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 WWP2O00308 870 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FOXE1O00358 373 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 P2RY10O00398 339 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GAPDHSO14556 408 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NDUFAB1O14561 156 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR7A17O14581 309 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RRHO14718 337 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FPGTO14772 594 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 BCKDKO14874 412 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARPC2O15144 300 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NBR2O15453 112 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLOCKO15516 846 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CFLARO15519 480 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RRP8O43159 456 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ADAM12O43184 909 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LATO43561 262 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 KDELR3O43731 214 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CALUO43852 315 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 EDIL3O43854 480 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR10H3O60404 316 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZIC3O60481 467 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SCN2BO60939 215 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 N4BP1O75113 896 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 STX11O75558 287 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RFPL2O75678 378 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 KRT33AO76009 404 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NEBLO76041 1014 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 AP2A2O94973 939 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GAS8-AS1O95177 125 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 KLHL2O95198 593 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLDN7O95471 211 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLDN9O95484 217 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZBTB11O95625 1053 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FGF19O95750 216 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 EML2O95834 649 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FADS2O95864 444 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TOMM40O96008 361 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HPRP00739 348 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CST4P01036 141 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CALCAP01258 141 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CRYAAP02489 173 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 APOHP02749 345 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MT-ND2P03891 347 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 VTNP04004 478 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TFAP2AP05549 437 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FCER2P06734 321 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERCC1P07992 297 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 KRT7P08729 469 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FGF2P09038 288 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACAA1P09110 424 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLTAP09496 248 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANXA4P09525 319 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 H2BFMP0C1H6 154 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 UBTFL1P0CB47 393 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OCMP0CE72 109 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF853P0CG23 659 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GSTT2P0CG29 244 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GSTT2BP0CG30 244 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PNMA6AP0CW24 399 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HAPLN1P10915 354 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MYL2P10916 166 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MBL2P11226 248 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FGF5P12034 268 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCL2P13500 99 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CD59P13987 128 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CPN1P15169 458 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 B4GALT1P15291 398 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 EZRP15311 586 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 H2AFXP16104 143 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF24P17028 368 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TSPAN8P19075 237 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 POLR2CP19387 275 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 AOC1P19801 751 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 EIF2S2P20042 333 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TPSB2P20231 275 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MSH3P20585 1137 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 IMPDH1P20839 514 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF10P21506 573 aaPredicted RBP0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms