RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 LYRM4Q9HD34 91 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 PRTFDC1Q9NRG1 225 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 DNAJB12Q9NXW2 375 aaKnown RBP7.46□□□□□ -1.22
SCN1A-207ENST00000507401 KCMF1Q9P0J7 381 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 LRFN1Q9P244 771 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 OPTCQ9UBM4 332 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 SEC14L3Q9UDX4 400 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 WBP11Q9Y2W2 641 aaKnown RBP7.46□□□□□ -1.22
SCN1A-207ENST00000507401 RNF11Q9Y3C5 154 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 CLDN16Q9Y5I7 305 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 TNPO3Q9Y5L0 923 aaKnown RBP7.46□□□□□ -1.22
SCN1A-207ENST00000507401 A0A096LPK6 155 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 GABRR3A8MPY1 467 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 FAM25AB3EWG3 89 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 FAM25CB3EWG5 89 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 FAM25GB3EWG6 89 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 UBXN8O00124 270 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 ACOT8O14734 319 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 HDAC3O15379 428 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 AKAP10O43572 662 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 UGDHO60701 494 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 MRPS14O60783 128 aaKnown RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 GMNNO75496 209 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 ZFAND5O76080 213 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 SCELO95171 688 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 GPIP06744 558 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 NCF2P19878 526 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 CD22P20273 847 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 ATP5A1P25705 553 aaKnown RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 PTX3P26022 381 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 MST1P26927 711 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 PIK3R1P27986 724 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 TYK2P29597 1187 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 CD40LGP29965 261 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 PIK3CBP42338 1070 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 PIK3CGP48736 1102 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 PRIM2P49643 509 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 NUDT2P50583 147 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 BMXP51813 675 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 PLA2G16P53816 162 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 GABARAPL2P60520 117 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 OC90Q02509 493 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 CHRNEQ04844 493 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 BNIP2Q12982 314 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 SLC13A2Q13183 592 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 SERTAD2Q14140 314 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 PCBP2Q15366 365 aaKnown RBP eCLIP7.45□□□□□ -1.221e-9■■■■■ 28.3
SCN1A-207ENST00000507401 ELAVL1Q15717 326 aaKnown RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 AP5B1Q2VPB7 878 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 FBXO48Q5FWF7 155 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 COX20Q5RI15 118 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 RBM48Q5RL73 367 aaKnown RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 CCNYL2Q5T2Q4 361 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 MROH9Q5TGP6 573 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 FCRLBQ6BAA4 426 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 ANKRD26P1Q6NSI1 321 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 NANOGP8Q6NSW7 305 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 MTFR2Q6P444 385 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 ZNF773Q6PK81 442 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 GFRALQ6UXV0 394 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 UBE3DQ7Z6J8 389 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 ANKRD13BQ86YJ7 626 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 CENPLQ8N0S6 344 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 ACOT4Q8N9L9 421 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 POGLUT1Q8NBL1 392 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 FAM98AQ8NCA5 519 aaKnown RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 MORN4Q8NDC4 146 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 BHLHE22Q8NFJ8 381 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 OR7G3Q8NG95 312 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 OR13F1Q8NGS4 319 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 GPR78Q96P69 363 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 F2RL3Q96RI0 385 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 CDRT15Q96T59 188 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 PKP2Q99959 881 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 OSBPL10Q9BXB5 764 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 MS4A8Q9BY19 250 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 COPS7BQ9H9Q2 264 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 WDR41Q9HAD4 459 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 ADAP2Q9NPF8 381 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 MS4A12Q9NXJ0 267 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 DAPK2Q9UIK4 370 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 YARS2Q9Y2Z4 477 aaKnown RBP7.45□□□□□ -1.22
SCN1A-207ENST00000507401 RAP2CQ9Y3L5 183 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 SPACA6W5XKT8 324 aa7.45□□□□□ -1.22
SCN1A-207ENST00000507401 TEX15Q9BXT5 2789 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 CELSR2Q9HCU4 2923 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 A0A0G2JN53 185 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 BBIP1A8MTZ0 92 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 SUPT3HB4E1H0 165 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 H0YIV9 168 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 KLRC4-KLRK1H3BQV0 150 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 FAM229AH3BQW9 127 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 ZNF195O14628 629 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 NME2P1O60361 137 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 MTRF1O75570 445 aaKnown RBP7.44□□□□□ -1.22
SCN1A-207ENST00000507401 SEC14L2O76054 403 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 TPPPO94811 219 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 MYO1DO94832 1006 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 SUPT7LO94864 414 aa7.44□□□□□ -1.22
SCN1A-207ENST00000507401 CLDN1O95832 211 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms