RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ATG4BQ9Y4P1 393 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 LAMA1P25391 3075 aa15.1■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 A0A0G2JPF8 293 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 HNRNPCL2B2RXH8 293 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 C2CD4DB7Z1M9 353 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 HNRNPCL3B7ZW38 293 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 C1QTNF3-AMACRE9PGA6 284 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ERAL1O75616 437 aaKnown RBP15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 HNRNPCL4P0DMR1 293 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 GSTM3P21266 225 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 FCARP24071 287 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SLAMF1Q13291 335 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TPBGQ13641 420 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PLK5Q496M5 336 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ARMC4Q5T2S8 1044 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CCDC116Q8IYX3 515 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 OR8K5Q8NH50 307 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SFXN5Q8TD22 340 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 RNFT2Q96EX2 444 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 C12orf66Q96MD2 445 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CAMK1GQ96NX5 476 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 FAIM2Q9BWQ8 316 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PINK1Q9BXM7 581 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TEX101Q9BY14 249 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MARCH7Q9H992 704 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 GPR55Q9Y2T6 319 aaPredicted RBP15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 OR1A2Q9Y585 309 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TMEM129A0AVI4 362 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CASC3O15234 703 aaKnown RBP15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 PRODHO43272 600 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MBTPS2O43462 519 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 LATO43561 262 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 NFATC1O95644 943 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 LAMP2P13473 410 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 NTSP30990 170 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SDC2P34741 201 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 RAB40BQ12829 278 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SLC9A5Q14940 896 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 TMEM35AQ53FP2 167 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 VITQ6UXI7 678 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ZNF517Q6ZMY9 492 aaPredicted RBP15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 LAPTM4BQ86VI4 370 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 GATAD2BQ8WXI9 593 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SUSD6Q92537 303 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ZG16BQ96DA0 208 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 MS4A6EQ96DS6 147 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 SYNPO2LQ9H987 977 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ZNF221Q9UK13 617 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CES1P1Q9UKY3 287 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 ACSL5Q9ULC5 683 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 GPR52Q9Y2T5 361 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 CHST2Q9Y4C5 530 aa15.09■□□□□ 0.01
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQL4 384 aaPredicted RBP15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TSPAN19P0C672 248 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 CD79BP40259 229 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 MAP4K2Q12851 820 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TAB1Q15750 504 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 GPAT3Q53EU6 434 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SLC36A4Q6YBV0 504 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 QSOX2Q6ZRP7 698 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SYT14Q8NB59 555 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ZNF485Q8NCK3 441 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 GNPDA2Q8TDQ7 276 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SLC9A6Q92581 669 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ST6GAL2Q96JF0 529 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ARHGDIGQ99819 225 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 MED18Q9BUE0 208 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 RERGLQ9H628 205 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SLC6A20Q9NP91 592 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ISYNA1Q9NPH2 558 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SEMA4GQ9NTN9 838 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 MDC1Q14676 2089 aaKnown RBP15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SEC14L5O43304 696 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 FRS3O43559 492 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 UBXN7O94888 489 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 CSF3P09919 207 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 LIMS3P0CW19 117 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 LIMS4P0CW20 117 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 C8orf89P0DMQ9 161 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ACP5P13686 325 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 MYL12AP19105 171 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 M6PRP20645 277 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 HIST1H1TP22492 207 aaPredicted RBP15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SOX9P48436 509 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SLC9A3P48764 834 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 RAB28P51157 221 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ASAH1Q13510 395 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 COL19A1Q14993 1142 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 MINDY4Q4G0A6 757 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 C18orf63Q68DL7 685 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SLC27A4Q6P1M0 643 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ABHD17CQ6PCB6 329 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 XKRXQ6PP77 449 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 TMEM107Q6UX40 140 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 FAM131AQ6UXB0 335 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 RAB43Q86YS6 212 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 ACOT4Q8N9L9 421 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 SMARCD2Q92925 531 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 RIPOR3Q96MK2 946 aa15.08■□□□□ 0
MSH5-SAPCD1-208ENST00000498473 KATNB1Q9BVA0 655 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms