RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ZNF397Q8NF99 534 aaPredicted RBP2.53□□□□□ -2
VPS50-219ENST00000495039 RFESDQ8TAC1 157 aa2.53□□□□□ -2
VPS50-219ENST00000495039 SLC13A3Q8WWT9 602 aa2.53□□□□□ -2
VPS50-219ENST00000495039 CCDC47Q96A33 483 aaKnown RBP2.53□□□□□ -2
VPS50-219ENST00000495039 SIGLEC12Q96PQ1 595 aa2.53□□□□□ -2
VPS50-219ENST00000495039 OR5M11Q96RB7 305 aa2.53□□□□□ -2
VPS50-219ENST00000495039 CCT8L2Q96SF2 557 aa2.53□□□□□ -2
VPS50-219ENST00000495039 ERVK-6Q9BXR3 956 aa2.53□□□□□ -2
VPS50-219ENST00000495039 ATG10Q9H0Y0 220 aa2.53□□□□□ -2
VPS50-219ENST00000495039 BCAP29Q9UHQ4 241 aa2.53□□□□□ -2
VPS50-219ENST00000495039 NUDCQ9Y266 331 aa2.53□□□□□ -2
VPS50-219ENST00000495039 G3V3Y1 287 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 SDC3O75056 442 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 ALPPP05187 535 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 ALPIP09923 528 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 SLC35G4P0C7Q5 338 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 ALPPL2P10696 532 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 RALAP11233 206 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 IDSP22304 550 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 GDF1P27539 372 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 SFNP31947 248 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 HSPA1LP34931 641 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 MDH2P40926 338 aaKnown RBP2.52□□□□□ -2.01
VPS50-219ENST00000495039 SRYQ05066 204 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 PDK1Q15118 436 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 BEND6Q5SZJ8 279 aaPredicted RBP2.52□□□□□ -2.01
VPS50-219ENST00000495039 CGB2Q6NT52 195 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 NEK5Q6P3R8 708 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 IGFL2Q6UWQ7 119 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 C2orf66Q6UXQ4 117 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 C1orf186Q6ZWK4 172 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 P4HA3Q7Z4N8 544 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 UNC5CLQ8IV45 518 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 WDR36Q8NI36 951 aaKnown RBP2.52□□□□□ -2.01
VPS50-219ENST00000495039 FNDC8Q8TC99 324 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 GTSF1Q8WW33 167 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 TMEM186Q96B77 213 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 DNAJA3Q96EY1 480 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 SPXQ9BT56 116 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 FAM114A2Q9NRY5 505 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP2.52□□□□□ -2.01
VPS50-219ENST00000495039 FZR1Q9UM11 496 aa2.52□□□□□ -2.01
VPS50-219ENST00000495039 GRIN2DO15399 1336 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 TRBV7-9A0A0J9YWB2 115 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 H3BMH7 237 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.51□□□□□ -2.01
VPS50-219ENST00000495039 SSX5O60225 188 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 TSC22D2O75157 780 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 MT-ATP6P00846 226 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 H2AFZP0C0S5 128 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 SLC35E2P0CK97 266 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 CYP11B1P15538 503 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 FASP25445 335 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 PRDX6P30041 224 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 AKT2P31751 481 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 RFC2P35250 354 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 CXCL6P80162 114 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 ASAH1Q13510 395 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 SNX1Q13596 522 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 GAMTQ14353 236 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 ZSWIM7Q19AV6 140 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 RAB12Q6IQ22 244 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 TMEM26Q6ZUK4 368 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 VPS36Q86VN1 386 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 ARL10Q8N8L6 244 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 CARD6Q9BX69 1037 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 TMEM231Q9H6L2 316 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 ZNF275Q9NSD4 429 aaPredicted RBP2.51□□□□□ -2.01
VPS50-219ENST00000495039 DCAF13Q9NV06 445 aaKnown RBP2.51□□□□□ -2.01
VPS50-219ENST00000495039 CNOT2Q9NZN8 540 aaKnown RBP2.51□□□□□ -2.01
VPS50-219ENST00000495039 KLRF1Q9NZS2 232 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 MBD2Q9UBB5 411 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 GHRLQ9UBU3 117 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 Q9UF83 564 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 ZNF490Q9ULM2 529 aaPredicted RBP2.51□□□□□ -2.01
VPS50-219ENST00000495039 BARX2Q9UMQ3 279 aaPredicted RBP2.51□□□□□ -2.01
VPS50-219ENST00000495039 PLA2G4CQ9UP65 541 aa2.51□□□□□ -2.01
VPS50-219ENST00000495039 CFAP65Q6ZU64 1925 aaKnown RBP2.5□□□□□ -2.01
VPS50-219ENST00000495039 KLF18A0A0U1RQI7 1052 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 TCP11X1B4DZS4 312 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 TOXO94900 526 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 DUSP14O95147 198 aaKnown RBP2.5□□□□□ -2.01
VPS50-219ENST00000495039 ZCCHC18P0CG32 403 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 CT45A10P0DMU9 189 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 ETS1P14921 441 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 IGFBP5P24593 272 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 PTPN4P29074 926 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 PRKAR2BP31323 418 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 POU3F4P49335 361 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 STK19P49842 368 aaPredicted RBP2.5□□□□□ -2.01
VPS50-219ENST00000495039 MEOX2P50222 304 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 PRKCEQ02156 737 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 CD47Q08722 323 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 RAB35Q15286 201 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 TGIF1Q15583 401 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 PKN2Q16513 984 aaKnown RBP2.5□□□□□ -2.01
VPS50-219ENST00000495039 LRIT3Q3SXY7 679 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 LGSNQ5TDP6 509 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 PLBD1Q6P4A8 553 aa2.5□□□□□ -2.01
VPS50-219ENST00000495039 ZCCHC12Q6PEW1 402 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms