RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 ACTL6AO96019 429 aa21.35■■□□□ 1.01
C9orf3-215ENST00000478473 ASMTP46597 345 aa21.35■■□□□ 1.01
C9orf3-215ENST00000478473 TMEM107Q6UX40 140 aa21.35■■□□□ 1.01
C9orf3-215ENST00000478473 LARP4Q71RC2 724 aaKnown RBP eCLIP21.35■■□□□ 1.01
C9orf3-215ENST00000478473 PLCZ1Q86YW0 608 aa21.35■■□□□ 1.01
C9orf3-215ENST00000478473 SLC44A2Q8IWA5 706 aaPredicted RBP21.35■■□□□ 1.01
C9orf3-215ENST00000478473 FAM83FQ8NEG4 500 aaPredicted RBP21.35■■□□□ 1.01
C9orf3-215ENST00000478473 NPDC1Q9NQX5 325 aaPredicted RBP21.35■■□□□ 1.01
C9orf3-215ENST00000478473 ACSS1Q9NUB1 689 aaPredicted RBP21.35■■□□□ 1.01
C9orf3-215ENST00000478473 KLRF1Q9NZS2 232 aa21.35■■□□□ 1.01
C9orf3-215ENST00000478473 WIF1Q9Y5W5 379 aa21.35■■□□□ 1.01
C9orf3-215ENST00000478473 C15orf38-AP3S2A0A0A6YYH1 394 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 PIP5K1BO14986 540 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 BMP7P18075 431 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 MSX1P28360 303 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 CEACAM8P31997 349 aaPredicted RBP21.34■■□□□ 1.01
C9orf3-215ENST00000478473 RPL38P63173 70 aaKnown RBP21.34■■□□□ 1.01
C9orf3-215ENST00000478473 ACSF3Q4G176 576 aaPredicted RBP21.34■■□□□ 1.01
C9orf3-215ENST00000478473 ZNF385BQ569K4 471 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 SH2D4BQ5SQS7 431 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 ZCCHC23Q6ZST2 131 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 OR4N2Q8NGD1 307 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 PPP3R2Q96LZ3 170 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 UGT2B28Q9BY64 529 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 DDX18Q9NVP1 670 aaKnown RBP21.34■■□□□ 1.01
C9orf3-215ENST00000478473 FIS1Q9Y3D6 152 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 HCFC1P51610 2035 aa21.34■■□□□ 1.01
C9orf3-215ENST00000478473 ESPNB1AK53 854 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 PDPK1O15530 556 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 BCKDHAP12694 445 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 CPN1P15169 458 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 TIMP3P35625 211 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 KRT20P35900 424 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 MLC1Q15049 377 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 SF3B4Q15427 424 aaKnown RBP eCLIP21.33■■□□□ 1.012e-8■■□□□ 13.7
C9orf3-215ENST00000478473 KRT71Q3SY84 523 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 EIPR1Q53HC9 387 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 WIPI1Q5MNZ9 446 aaPredicted RBP21.33■■□□□ 1.01
C9orf3-215ENST00000478473 LRIG3Q6UXM1 1119 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 PPCDCQ96CD2 204 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 DTNBP1Q96EV8 351 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 ZBED6CLQ96FA7 236 aaPredicted RBP21.33■■□□□ 1.01
C9orf3-215ENST00000478473 WDYHV1Q96HA8 205 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 TSSK3Q96PN8 268 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 UCK2Q9BZX2 261 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 SERHLQ9NQF3 203 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 ATP6V1HQ9UI12 483 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 ZDHHC2Q9UIJ5 367 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 ABCG2Q9UNQ0 655 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 SLC6A5Q9Y345 797 aa21.33■■□□□ 1.01
C9orf3-215ENST00000478473 ARHGAP21Q5T5U3 1957 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 PDZD2O15018 2839 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 CD8B2A6NJW9 211 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 CTIFO43310 598 aaKnown RBP21.32■■□□□ 1
C9orf3-215ENST00000478473 FADS1O60427 444 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 DHRS4L1P0CG22 281 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 IL12BP29460 328 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 SSTR2P30874 369 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 SRD5A2P31213 254 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 ZNF155Q12901 538 aaPredicted RBP21.32■■□□□ 1
C9orf3-215ENST00000478473 GAB1Q13480 694 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 SLC25A35Q3KQZ1 300 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 NSUN5P2Q63ZY6 315 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 ZNF551Q7Z340 670 aaPredicted RBP21.32■■□□□ 1
C9orf3-215ENST00000478473 EXOC3L1Q86VI1 746 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 LACC1Q8IV20 430 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 ABTB1Q969K4 478 aaPredicted RBP21.32■■□□□ 1
C9orf3-215ENST00000478473 Q9N2J8 555 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 BAIAP2L1Q9UHR4 511 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 OR10H1Q9Y4A9 318 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 ACTL7BQ9Y614 415 aa21.32■■□□□ 1
C9orf3-215ENST00000478473 NKX2-6A6NCS4 301 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 C2orf72A6NCS6 295 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 HSPB2A8KAH6 182 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 TMEM114B3SHH9 223 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 B4DXG7 233 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 BIRC5O15392 142 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 RGS16O15492 202 aaPredicted RBP21.31■■□□□ 1
C9orf3-215ENST00000478473 IL33O95760 270 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 CYP4B1P13584 511 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 SERPINB4P48594 390 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 GFRA1P56159 465 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 HSPB2Q16082 182 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 EXOSC6Q5RKV6 272 aaKnown RBP21.31■■□□□ 1
C9orf3-215ENST00000478473 R3HCC1LQ7Z5L2 792 aaKnown RBP21.31■■□□□ 1
C9orf3-215ENST00000478473 LIX1LQ8IVB5 337 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 DDIASQ8IXT1 998 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 OR10Q1Q8NGQ4 319 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 ZFP28Q8NHY6 868 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 ZPLD1Q8TCW7 415 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 GFM2Q969S9 779 aaKnown RBP21.31■■□□□ 1
C9orf3-215ENST00000478473 CIDECQ96AQ7 238 aaPredicted RBP21.31■■□□□ 1
C9orf3-215ENST00000478473 EFHD2Q96C19 240 aaPredicted RBP21.31■■□□□ 1
C9orf3-215ENST00000478473 C3orf30Q96M34 536 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 ZIM3Q96PE6 472 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 ALKBH4Q9NXW9 302 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 CBLCQ9ULV8 474 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 MAPRE3Q9UPY8 281 aa21.31■■□□□ 1
C9orf3-215ENST00000478473 INTS1Q8N201 2190 aaKnown RBP21.3■■□□□ 1
C9orf3-215ENST00000478473 GIMAP1-GIMAP5A0A087WTJ2 511 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms