RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 SLC28A1O00337 649 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 RGS14O43566 566 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 DIAPH2O60879 1101 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 CBR3O75828 277 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 IL2RAP01589 272 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 TACR1P25103 407 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 DNAJA1P31689 397 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 VSNL1P62760 191 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 SNTB1Q13884 538 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 NSUN5P2Q63ZY6 315 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 OR5M10Q6IEU7 315 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 ANKRD26P1Q6NSI1 321 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 IKBIPQ70UQ0 350 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 PLCZ1Q86YW0 608 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 EGLN2Q96KS0 407 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 OR2B2Q9GZK3 357 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 DDX18Q9NVP1 670 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 C1orf109Q9NX04 203 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 FBXL2Q9UKC9 423 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 MED13LQ71F56 2210 aa14.3□□□□□ -0.12
CCDC88B-205ENST00000472524 A0A087WV62 115 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 C17orf51A8MQB3 221 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 DVL2O14641 736 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 SCO2O43819 266 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 TRIM13O60858 407 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 SPAG7O75391 227 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 ACTL6AO96019 429 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 CYP4B1P13584 511 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 PRPH2P23942 346 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 UQCRC1P31930 480 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 CEACAM8P31997 349 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 TIMP3P35625 211 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 PNLIPRP2P54317 469 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 PSPHP78330 225 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 PSG6Q00889 435 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 SRYQ05066 204 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 IFFO1Q0D2I5 559 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 HSPB3Q12988 150 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 RCAN2Q14206 197 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 KIAA0040Q15053 153 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 SF3B4Q15427 424 aaKnown RBP eCLIP14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 CES4AQ5XG92 561 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 TRABD2AQ86V40 505 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 IFNEQ86WN2 208 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 RIBC1Q8N443 379 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 OR2T11Q8NH01 316 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 AMDHD1Q96NU7 426 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 FAM111AQ96PZ2 611 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 MECRQ9BV79 373 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 MKS1Q9NXB0 559 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 TAS2R10Q9NYW0 307 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 TAS2R7Q9NYW3 318 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 DKKL1Q9UK85 242 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 C19orf53Q9UNZ5 99 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 WBP11Q9Y2W2 641 aaKnown RBP14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 L3MBTL1Q9Y468 752 aa14.29□□□□□ -0.12
CCDC88B-205ENST00000472524 CD8B2A6NJW9 211 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 H0Y3Z8 333 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 UPK1AO00322 258 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 PLOD2O00469 737 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 PDPK1O15530 556 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 AKAP10O43572 662 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 SLITRK5O94991 958 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 ZWINTO95229 277 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 CHEK2O96017 543 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 CHRNGP07510 517 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 LINC00032P0C843 101 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 NEFHP12036 1026 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 GRK2P25098 689 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 ALDH3A1P30838 453 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 SRD5A2P31213 254 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 EVI2BP34910 448 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 RFX3P48380 749 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 ASCL1P50553 236 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 AGFG1P52594 562 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 ZNF136P52737 540 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 IST1P53990 364 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 RPL38P63173 70 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 MRPS22P82650 360 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 GALNTL6Q49A17 601 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 ARSKQ6UWY0 536 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 Q6ZSR9 355 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 ZNF551Q7Z340 670 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 TRIM42Q8IWZ5 723 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 DDIASQ8IXT1 998 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 BANPQ8N9N5 519 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 OR4K17Q8NGC6 315 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 CLHC1Q8NHS4 586 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 CIDECQ96AQ7 238 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 ELP4Q96EB1 424 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 METTL2AQ96IZ6 378 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 SFXN2Q96NB2 322 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 TSSK3Q96PN8 268 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 TRMOQ9BU70 441 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 TUBB1Q9H4B7 451 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 SLC24A3Q9HC58 644 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 EQTNQ9NQ60 294 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 SLC17A7Q9P2U7 560 aa14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 RPH3AQ9Y2J0 694 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-205ENST00000472524 MBD3L4A6NDZ8 208 aaPredicted RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms