RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 DGAT2L6Q6ZPD8 337 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 PRSS48Q7RTY5 328 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 SLC35F3Q8IY50 421 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 DEPDC4Q8N2C3 294 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 ZNF675Q8TD23 568 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 IPCEF1Q8WWN9 437 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-205ENST00000466192 FKBP10Q96AY3 582 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 ZDHHC12Q96GR4 267 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 FNDC11Q9BVV2 318 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 ERVMER34-1Q9H9K5 563 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 PDE7BQ9NP56 450 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 MKLN1Q9UL63 735 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 VPS13AQ96RL7 3174 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 SOX14O95416 240 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 OXSR1O95747 527 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-205ENST00000466192 AGR2O95994 175 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 ADAP00813 363 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 CDK4P11802 303 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 MYF5P13349 255 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 CRISP1P54107 249 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 SMIM11AP58511 58 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 CSNK2BP67870 215 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 BNC1Q01954 994 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 FAM53BQ14153 422 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 EXOSC7Q15024 291 aaKnown RBP17.04■□□□□ 0.32
COL9A3-205ENST00000466192 SYT16Q17RD7 645 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 EXOSC6Q5RKV6 272 aaKnown RBP17.04■□□□□ 0.32
COL9A3-205ENST00000466192 MAMSTRQ6ZN01 415 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 CTHRC1Q96CG8 243 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 PEX11GQ96HA9 241 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 FUZQ9BT04 418 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 COPS4Q9BT78 406 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 IER2Q9BTL4 223 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 ACOT13Q9NPJ3 140 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 FTSJ1Q9UET6 329 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 IGHV1OR21-1A0A087WYE8 117 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 TRIM64BA6NI03 449 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 TGFBR3LH3BV60 316 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 FRS3O43559 492 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 NUDT21O43809 227 aaKnown RBP17.03■□□□□ 0.32
COL9A3-205ENST00000466192 RNH1P13489 461 aaKnown RBP17.03■□□□□ 0.32
COL9A3-205ENST00000466192 ZNF182P17025 639 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-205ENST00000466192 GABRB1P18505 474 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 CDC42P60953 191 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 HPCAP84074 193 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 NFATC3Q12968 1075 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 TARDBPQ13148 414 aaKnown RBP eCLIP17.03■□□□□ 0.32
COL9A3-205ENST00000466192 DGCR6Q14129 220 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 KCNAB1Q14722 419 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 SHBQ15464 509 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 ARHGAP11BQ3KRB8 267 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 AHCYL2Q96HN2 611 aaKnown RBP17.03■□□□□ 0.32
COL9A3-205ENST00000466192 PRR14Q9BWN1 585 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 UCK2Q9BZX2 261 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 CHRNA10Q9GZZ6 450 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 SPRTNQ9H040 489 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-205ENST00000466192 PIGUQ9H490 435 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 MGAT4BQ9UQ53 548 aa17.03■□□□□ 0.32
COL9A3-205ENST00000466192 GPR55Q9Y2T6 319 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-205ENST00000466192 SEC16AO15027 2179 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 A0A1W2PRQ8 180 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 SH3PXD2BA1X283 911 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 ZAR1LA6NP61 321 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 COQ9O75208 318 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 SLITRK5O94991 958 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 NSA2O95478 260 aaKnown RBP17.02■□□□□ 0.32
COL9A3-205ENST00000466192 IGFBP1P08833 259 aaPredicted RBP17.02■□□□□ 0.32
COL9A3-205ENST00000466192 SLC35E2P0CK97 266 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 PSMB9P28065 219 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 C21orf33P30042 268 aaPredicted RBP17.02■□□□□ 0.32
COL9A3-205ENST00000466192 CNR2P34972 360 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 CFHR1Q03591 330 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 CCNJQ5T5M9 372 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 TYW3Q6IPR3 259 aaKnown RBP17.02■□□□□ 0.32
COL9A3-205ENST00000466192 PGBD2Q6P3X8 592 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 PODNL1Q6PEZ8 512 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 SLC16A12Q6ZSM3 486 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 SVOPQ8N4V2 548 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 METTL27Q8N6F8 245 aaPredicted RBP17.02■□□□□ 0.32
COL9A3-205ENST00000466192 MAFAQ8NHW3 353 aaPredicted RBP17.02■□□□□ 0.32
COL9A3-205ENST00000466192 CD180Q99467 661 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 SDF2Q99470 211 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 MAN2C1Q9NTJ4 1040 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 REV1Q9UBZ9 1251 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 PSORS1C1Q9UIG5 152 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 TMEM184BQ9Y519 407 aaPredicted RBP17.02■□□□□ 0.32
COL9A3-205ENST00000466192 CSNK1G3Q9Y6M4 447 aa17.02■□□□□ 0.32
COL9A3-205ENST00000466192 SYT5O00445 386 aa17.02■□□□□ 0.31
COL9A3-205ENST00000466192 FOXD2O60548 495 aaPredicted RBP17.02■□□□□ 0.31
COL9A3-205ENST00000466192 CDC123O75794 336 aaPredicted RBP17.02■□□□□ 0.31
COL9A3-205ENST00000466192 OSMP13725 252 aa17.02■□□□□ 0.31
COL9A3-205ENST00000466192 STT3AP46977 705 aa17.02■□□□□ 0.31
COL9A3-205ENST00000466192 DHPSP49366 369 aaPredicted RBP17.02■□□□□ 0.31
COL9A3-205ENST00000466192 UGT2B15P54855 530 aa17.02■□□□□ 0.31
COL9A3-205ENST00000466192 SKP1P63208 163 aa17.02■□□□□ 0.31
COL9A3-205ENST00000466192 LSM11P83369 360 aaKnown RBP eCLIP17.02■□□□□ 0.317e-10■■□□□ 12.8
COL9A3-205ENST00000466192 MVKQ03426 396 aa17.02■□□□□ 0.31
COL9A3-205ENST00000466192 ERV3-1Q14264 604 aa17.02■□□□□ 0.31
COL9A3-205ENST00000466192 OR52P1PQ8NH57 321 aa17.02■□□□□ 0.31
COL9A3-205ENST00000466192 SIGLEC11Q96RL6 698 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms