RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 MRTO4Q9UKD2 239 aaKnown RBP13.9□□□□□ -0.18
LIMS3-201ENST00000437679 SNPHO15079 494 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 PRPS1L1P21108 318 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 TRPC1P48995 793 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 CDK9P50750 372 aaKnown RBP13.89□□□□□ -0.19
LIMS3-201ENST00000437679 SLC18A1P54219 525 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 EMX2Q04743 252 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 BST1Q10588 318 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 PTGR1Q14914 329 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 DECR1Q16698 335 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 SMU1Q2TAY7 513 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 EMC4Q5J8M3 183 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 CPTPQ5TA50 214 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 FNDC7Q5VTL7 733 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 ZNF585AQ6P3V2 769 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 NCCRP1Q6ZVX7 275 aaPredicted RBP13.89□□□□□ -0.19
LIMS3-201ENST00000437679 SZRD1Q7Z422 152 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 NATD1Q8N6N6 113 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 OR7A2PQ8NGA2 310 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 OR4N2Q8NGD1 307 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 NEIL3Q8TAT5 605 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 EFHD2Q96C19 240 aaPredicted RBP13.89□□□□□ -0.19
LIMS3-201ENST00000437679 TLCD1Q96CP7 247 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 NTNG2Q96CW9 530 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 SORT1Q99523 831 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 LMF2Q9BU23 707 aaKnown RBP13.89□□□□□ -0.19
LIMS3-201ENST00000437679 GALNT9Q9HCQ5 603 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 EQTNQ9NQ60 294 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 ATAD3AQ9NVI7 634 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 COQ3Q9NZJ6 369 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 NOP53Q9NZM5 478 aaKnown RBP13.89□□□□□ -0.19
LIMS3-201ENST00000437679 TNFRSF10DQ9UBN6 386 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 HAO1Q9UJM8 370 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 CBLCQ9ULV8 474 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 HRH3Q9Y5N1 445 aa13.89□□□□□ -0.19
LIMS3-201ENST00000437679 KLF2Q9Y5W3 355 aaPredicted RBP13.89□□□□□ -0.19
LIMS3-201ENST00000437679 HPNP05981 417 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 ACVR2AP27037 513 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 GABRA3P34903 492 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 PTGDSP41222 190 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 PRKAG1P54619 331 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 PSMD4P55036 377 aaKnown RBP13.88□□□□□ -0.19
LIMS3-201ENST00000437679 WDR4P57081 412 aaKnown RBP13.88□□□□□ -0.19
LIMS3-201ENST00000437679 GAB1Q13480 694 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 MLC1Q15049 377 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 VPS26BQ4G0F5 336 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 ACAD11Q709F0 780 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 WDR53Q7Z5U6 358 aaPredicted RBP13.88□□□□□ -0.19
LIMS3-201ENST00000437679 NUP43Q8NFH3 380 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 DTNBP1Q96EV8 351 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 UBQLN3Q9H347 655 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 AKTIPQ9H8T0 292 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 ALKBH4Q9NXW9 302 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 ASIC5Q9NY37 505 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 SPRR3Q9UBC9 169 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 MAPRE3Q9UPY8 281 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 CACNA1CQ13936 2221 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 PHF3Q92576 2039 aaKnown RBP13.88□□□□□ -0.19
LIMS3-201ENST00000437679 UNC79Q9P2D8 2635 aa13.88□□□□□ -0.19
LIMS3-201ENST00000437679 NUP214P35658 2090 aaPredicted RBP13.87□□□□□ -0.19
LIMS3-201ENST00000437679 C15orf38-AP3S2A0A0A6YYH1 394 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 A0A1W2PRB8 838 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 C2orf72A6NCS6 295 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 CYSRT1A8MQ03 144 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 EMC8O43402 210 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 WDR1O75083 606 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 CBR3O75828 277 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 KCNH1O95259 989 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 CLDN14O95500 239 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 LAMP1P11279 417 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 G6PDP11413 515 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 CYP4B1P13584 511 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 EFNA1P20827 205 aaPredicted RBP13.87□□□□□ -0.19
LIMS3-201ENST00000437679 ENDOUP21128 410 aaKnown RBP13.87□□□□□ -0.19
LIMS3-201ENST00000437679 HTR1EP28566 365 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 PTPN6P29350 595 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 GCKP35557 465 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 DCTP40126 519 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 PRR5P85299 388 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 ATG16L1Q676U5 607 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 TRIM42Q8IWZ5 723 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 KRTCAP2Q8N6L1 136 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 CDRT4Q8N9R6 151 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 OR5P2Q8WZ92 322 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 RND1Q92730 232 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 SDCCAG3Q96C92 435 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 MS4A4EQ96PG1 132 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 NUF2Q9BZD4 464 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 SERHLQ9NQF3 203 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 PNPOQ9NVS9 261 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 THAP1Q9NVV9 213 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 NTMQ9P121 344 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 WIF1Q9Y5W5 379 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 CENPEQ02224 2701 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 MAST4O15021 2626 aa13.87□□□□□ -0.19
LIMS3-201ENST00000437679 NBPF19A0A087WUL8 3843 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 IL33O95760 270 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 HOXD4P09016 255 aaPredicted RBP13.86□□□□□ -0.19
LIMS3-201ENST00000437679 GABRA1P14867 456 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 EVI2BP34910 448 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms