RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 POT1Q9NUX5 634 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 GIPP09681 153 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-206ENST00000409809 GABRB3P28472 473 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 PAQR3Q6TCH7 311 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 BEND4Q6ZU67 534 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 KLBQ86Z14 1044 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 C12orf29Q8N999 325 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 OR4K1Q8NGD4 311 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 SLC22A7Q9Y694 548 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF536O15090 1300 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 TPRP12270 2363 aaKnown RBP12.28□□□□□ -0.44
COL6A3-206ENST00000409809 ALAS2P22557 587 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 PAFAH1B3Q15102 231 aaKnown RBP12.28□□□□□ -0.44
COL6A3-206ENST00000409809 PPA1Q15181 289 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 OR9I1Q8NGQ6 314 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 GRHL3Q8TE85 626 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 FAM46AQ96IP4 442 aaKnown RBP12.28□□□□□ -0.44
COL6A3-206ENST00000409809 TMEM74Q96NL1 305 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 OR51F1A6NGY5 319 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 MANSC4A6NHS7 340 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-206ENST00000409809 B4GALT5O43286 388 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 SLC5A2P31639 672 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 ADGRF1Q5T601 910 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 SLC5A11Q8WWX8 675 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 TGIF2Q9GZN2 237 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 BRF2Q9HAW0 419 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 OARD1Q9Y530 152 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 PMS2P2O95744 297 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 GRAMD2AQ8IUY3 354 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 C15orf54Q8N8G6 183 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 GLIS3Q8NEA6 775 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 NICN1Q9BSH3 213 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 SPHK1Q9NYA1 384 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 PCDHB10Q9UN67 800 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 COPS3Q9UNS2 423 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 CHD5Q8TDI0 1954 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 OR4C5Q8NGB2 326 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 OR52H1Q8NGJ2 320 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 P2RY13Q9BPV8 354 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 POLDIP3Q9BY77 421 aaKnown RBP12.28□□□□□ -0.44
COL6A3-206ENST00000409809 CHRDQ9H2X0 955 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 FANCGO15287 622 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 LGALS2P05162 132 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 CSF3P09919 207 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF157P51786 506 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-206ENST00000409809 GDF10P55107 478 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 CLDN8P56748 225 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 LCN6P62502 163 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF695Q8IW36 515 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 COMMD1Q8N668 190 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 ST8SIA4Q92187 359 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 DGAT2Q96PD7 388 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 NTPCRQ9BSD7 190 aaKnown RBP12.28□□□□□ -0.44
COL6A3-206ENST00000409809 NUPL2O15504 423 aaKnown RBP12.27□□□□□ -0.44
COL6A3-206ENST00000409809 CYB5BO43169 146 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 INAVAQ3KP66 663 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 SLC8B1Q6J4K2 584 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 BAGE3Q86Y29 109 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 BAGE2Q86Y30 109 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 OR5W2Q8NH69 310 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 PPTC7Q8NI37 304 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 TMPRSS5Q9H3S3 457 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 ZCCHC4Q9H5U6 513 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 GAR1Q9NY12 217 aaKnown RBP12.27□□□□□ -0.44
COL6A3-206ENST00000409809 CABIN1Q9Y6J0 2220 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.27□□□□□ -0.44
COL6A3-206ENST00000409809 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.27□□□□□ -0.44
COL6A3-206ENST00000409809 STK17BO94768 372 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 SLC25A11Q02978 314 aaKnown RBP12.27□□□□□ -0.44
COL6A3-206ENST00000409809 GPR176Q14439 515 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 OXA1LQ15070 435 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 SEMA4CQ9C0C4 833 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 CERS4Q9HA82 394 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.27□□□□□ -0.44
COL6A3-206ENST00000409809 SLIT2O94813 1529 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 MYO5AQ9Y4I1 1855 aaKnown RBP12.27□□□□□ -0.44
COL6A3-206ENST00000409809 A0A0A6YYH2 397 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 A6NJ64 397 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 SDHDO14521 159 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 SOCS5O75159 536 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 GABRA2P47869 451 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 DSC2Q02487 901 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 OR10Z1Q8NGY1 313 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 GPR148Q8TDV2 347 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 CENPMQ9NSP4 180 aa12.27□□□□□ -0.44
COL6A3-206ENST00000409809 DICER1Q9UPY3 1922 aaKnown RBP12.27□□□□□ -0.45
COL6A3-206ENST00000409809 F6UZH7 168 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 LAP3P28838 519 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 CASRP41180 1078 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 LAPTM4AQ15012 233 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 GPR68Q15743 365 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 NOXRED1Q6NXP6 359 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 TMPRSS7Q7RTY8 843 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.27□□□□□ -0.45
COL6A3-206ENST00000409809 DCAF13Q9NV06 445 aaKnown RBP12.27□□□□□ -0.45
COL6A3-206ENST00000409809 SMIM35A0A1B0GVV1 85 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 TACR2P21452 398 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 CX3CR1P49238 355 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 FAM58AQ8N1B3 248 aa12.27□□□□□ -0.45
COL6A3-206ENST00000409809 SMPD4Q9NXE4 827 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms