RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 FAM160A2Q8N612 972 aaPredicted RBP12.56□□□□□ -0.4
VPS54-203ENST00000409558 FCGR1BQ92637 280 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 WDR34Q96EX3 536 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 MENTQ9BUN1 341 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 MMP27Q9H306 513 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 IL21RQ9HBE5 538 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 KLHL1Q9NR64 748 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 NLGN3Q9NZ94 848 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 NFKBIL1Q9UBC1 381 aaPredicted RBP12.56□□□□□ -0.4
VPS54-203ENST00000409558 SLC7A7Q9UM01 511 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 FAAHO00519 579 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 SOCS6O14544 535 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 CTSVO60911 334 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 SOX30O94993 753 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 CPMP14384 443 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 PYDC2Q56P42 97 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 SYT14P1Q58G82 188 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 POMZP3Q6PJE2 187 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 FBXO15Q8NCQ5 510 aaPredicted RBP12.56□□□□□ -0.4
VPS54-203ENST00000409558 OR8D4Q8NGM9 314 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 SAMD8Q96LT4 415 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 CCDC3Q9BQI4 270 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 MGAT4BQ9UQ53 548 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 APOA1P02647 267 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 C5AR1P21730 350 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 ENTPD8Q5MY95 495 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 IL20RBQ6UXL0 311 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 NRARPQ7Z6K4 114 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 CADM2Q8N3J6 435 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 OR2L5Q8NG80 312 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 NECTIN4Q96NY8 510 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 HDAC8Q9BY41 377 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 PELI2Q9HAT8 420 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 C3orf14Q9HBI5 128 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 A0A0A6YYD5 115 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 SGK494L7N484 410 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 PSMD9O00233 223 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 KCNK2O95069 426 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 PGDP52209 483 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 HNRNPFP52597 415 aaKnown RBP12.55□□□□□ -0.4
VPS54-203ENST00000409558 OTPQ5XKR4 325 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 TMPRSS11AQ6ZMR5 421 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 ZNF765Q7L2R6 523 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 KIF18BQ86Y91 864 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 OR8J1Q8NGP2 316 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 SLC35A4Q96G79 324 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 METTL2AQ96IZ6 378 aaKnown RBP12.55□□□□□ -0.4
VPS54-203ENST00000409558 OR2M4Q96R27 311 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 RPL36Q9Y3U8 105 aaKnown RBP12.55□□□□□ -0.4
VPS54-203ENST00000409558 SLC35G6P0C7Q6 338 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 NOS3P29474 1203 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 CDH11P55287 796 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 RPA4Q13156 261 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 PLBD1Q6P4A8 553 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 LAPTM4BQ86VI4 370 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 ZBTB8BQ8NAP8 495 aaPredicted RBP12.55□□□□□ -0.4
VPS54-203ENST00000409558 OR52I1Q8NGK6 324 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 RAB7BQ96AH8 199 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 TBC1D20Q96BZ9 403 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 PCBD2Q9H0N5 130 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 DDX31Q9H8H2 851 aaKnown RBP12.55□□□□□ -0.4
VPS54-203ENST00000409558 SIAEQ9HAT2 523 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 KLHL28Q9NXS3 571 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 ZNF624Q9P2J8 865 aaPredicted RBP12.55□□□□□ -0.4
VPS54-203ENST00000409558 UNC13CQ8NB66 2214 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 WDFY3Q8IZQ1 3526 aa12.55□□□□□ -0.4
VPS54-203ENST00000409558 CARNS1A5YM72 827 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 TGM1P22735 817 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 ZNF770Q6IQ21 691 aaPredicted RBP12.54□□□□□ -0.4
VPS54-203ENST00000409558 MTFR2Q6P444 385 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 ELP4Q96EB1 424 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 VMP1Q96GC9 406 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 NELL2Q99435 816 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 BARHL1Q9BZE3 327 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 A4GALTQ9NPC4 353 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 KCMF1Q9P0J7 381 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 ASB4Q9Y574 426 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 MED12Q93074 2177 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 TRIM64BA6NI03 449 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 B4DGG1 531 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 AQP9O43315 295 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 HCRTR1O43613 425 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 CLEC3AO75596 197 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 CD97P48960 835 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 COPZ1P61923 177 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 NCF4Q15080 339 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 MFSD4BQ5TF39 518 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 KLBQ86Z14 1044 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 PFN4Q8NHR9 129 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 ZNF582Q96NG8 517 aaPredicted RBP12.54□□□□□ -0.4
VPS54-203ENST00000409558 PTCHD1Q96NR3 888 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 DCLRE1CQ96SD1 692 aaKnown RBP12.54□□□□□ -0.4
VPS54-203ENST00000409558 SECISBP2Q96T21 854 aaKnown RBP12.54□□□□□ -0.4
VPS54-203ENST00000409558 TEX101Q9BY14 249 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 WASH6PQ9NQA3 447 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 TBCCD1Q9NVR7 557 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 WBP1LQ9NX94 342 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 MRPS7Q9Y2R9 242 aaKnown RBP12.54□□□□□ -0.4
VPS54-203ENST00000409558 TRAV27A0A087WT01 109 aa12.54□□□□□ -0.4
VPS54-203ENST00000409558 LRRN3E7EW58 273 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms