RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RTP2Q5QGT7 225 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 PRAMEF8Q5VWM4 474 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 PRAMEF7Q5VXH5 474 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 LCN10Q6JVE6 187 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 SLC35F2Q8IXU6 374 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 NAGSQ8N159 534 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ESX1Q8N693 406 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ADGRB2O60241 1585 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 MPIG6BO95866 241 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 WDPCPO95876 746 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 GYPBP06028 91 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 MPC1LP0DKB6 136 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 DUSP3P51452 185 aaPredicted RBP13□□□□□ -0.33
COL4A1-201ENST00000375820 P2RY14Q15391 338 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 SLC5A8Q8N695 610 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 ITFG2Q969R8 447 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF681Q96N22 645 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 MYNNQ9NPC7 610 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 MEIS3P2A8K0S8 358 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 F2P00734 622 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 RPS2P15880 293 aaKnown RBP13□□□□□ -0.33
COL4A1-201ENST00000375820 CEACAM7Q14002 265 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF695Q8IW36 515 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 LRRC46Q96FV0 321 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 SAMD11Q96NU1 681 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 SUCNR1Q9BXA5 334 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 POPDC3Q9HBV1 291 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 CD93Q9NPY3 652 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 TUBG2Q9NRH3 451 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 CCM2LQ9NUG4 571 aaPredicted RBP13□□□□□ -0.33
COL4A1-201ENST00000375820 MYO10Q9HD67 2058 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 PLIN4Q96Q06 1357 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 SLC22A31A6NKX4 558 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 MC3RP41968 323 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 ETV4P43268 484 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 MTNR1AP48039 350 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 RGS6P49758 472 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 INCA1Q0VD86 236 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 SCGB2A2Q13296 93 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 HNF4GQ14541 408 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 TRAM1Q15629 374 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 C10orf62Q5T681 223 aaPredicted RBP13□□□□□ -0.33
COL4A1-201ENST00000375820 KIAA0319Q5VV43 1072 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 CYP4V2Q6ZWL3 525 aaPredicted RBP13□□□□□ -0.33
COL4A1-201ENST00000375820 FTMTQ8N4E7 242 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 ACBD7Q8N6N7 88 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 GCDHQ92947 438 aaPredicted RBP13□□□□□ -0.33
COL4A1-201ENST00000375820 POTEKPQ9BYX7 375 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 CDC14CA4D256 554 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 ARPC5O15511 151 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 DBHP09172 617 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 HTR1EP28566 365 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 RPL26P61254 145 aaKnown RBP13□□□□□ -0.33
COL4A1-201ENST00000375820 PIN1Q13526 163 aaPredicted RBP13□□□□□ -0.33
COL4A1-201ENST00000375820 GRIN2CQ14957 1233 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 PCYT2Q99447 389 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 CDH20Q9HBT6 801 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 DOK2O60496 412 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 TSPAN15O95858 294 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 DCNP07585 359 aaKnown RBP13□□□□□ -0.33
COL4A1-201ENST00000375820 ARAFP10398 606 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 EVI2BP34910 448 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 TMBIM6P55061 237 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 OR7A5Q15622 319 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 AKR1C8PQ5T2L2 129 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 ANKRD54Q6NXT1 300 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 PXKQ7Z7A4 578 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 WDTC1Q8N5D0 677 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 SLAMF9Q96A28 289 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 C1orf74Q96LT6 269 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 HHIPQ96QV1 700 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 MAP3K3Q99759 626 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 LHPPQ9H008 270 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 FKRPQ9H9S5 495 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 TMEM59LQ9UK28 342 aa13□□□□□ -0.33
COL4A1-201ENST00000375820 A0A1W2PQL4 384 aaPredicted RBP12.99□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF840PA6NDX5 716 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 SERPINA7P05543 415 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 BMP4P12644 408 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 ERVPABLB-1P60509 514 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 PIP5KL1Q5T9C9 394 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 NPWQ8N729 165 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 SFXN1Q9H9B4 322 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 TGM5O43548 720 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 ERV3-1Q14264 604 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 OR52E8Q6IFG1 317 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 GPR149Q86SP6 731 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 MFSD6LQ8IWD5 586 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF296Q8WUU4 475 aaPredicted RBP12.99□□□□□ -0.33
COL4A1-201ENST00000375820 SENP5Q96HI0 755 aaPredicted RBP12.99□□□□□ -0.33
COL4A1-201ENST00000375820 MVB12BQ9H7P6 319 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 ACAD8Q9UKU7 415 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 PIAS3Q9Y6X2 628 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 SH3PXD2BA1X283 911 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 GSRP00390 522 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 RAB6AP20340 208 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 CHPT1Q8WUD6 406 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 HIF1ANQ9NWT6 349 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 MROH1Q8NDA8 1641 aa12.99□□□□□ -0.33
COL4A1-201ENST00000375820 H0YAE9 185 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms