RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 SCAMP1O15126 338 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 SMAD9O15198 467 aaKnown RBP18.27■□□□□ 0.52
USP48-201ENST00000308271 SLC31A1O15431 190 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 FABP7O15540 132 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 CD3GP09693 182 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 IL32P24001 234 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 KCTD9Q7L273 389 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 NUP54Q7Z3B4 507 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 NRSN1Q8IZ57 195 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 RNF175Q8N4F7 328 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 HDDC3Q8N4P3 179 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 CASTOR1Q8WTX7 329 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 IRF7Q92985 503 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 ZNF419Q96HQ0 510 aaPredicted RBP18.27■□□□□ 0.52
USP48-201ENST00000308271 BABAM2Q9NXR7 383 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 B3GNT2Q9NY97 397 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 IL20RAQ9UHF4 553 aa18.27■□□□□ 0.52
USP48-201ENST00000308271 TRBV4-1A0A0J9YWV2 114 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 ZNF8P17098 575 aaPredicted RBP18.27■□□□□ 0.51
USP48-201ENST00000308271 PVALBP20472 110 aaPredicted RBP18.27■□□□□ 0.51
USP48-201ENST00000308271 RBMS1P29558 406 aaKnown RBP18.27■□□□□ 0.51
USP48-201ENST00000308271 PGDP52209 483 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 CCDC58Q4VC31 144 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 TPRA1Q86W33 373 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 SORCS1Q8WY21 1168 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 PCDHB16Q9NRJ7 776 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 SLC25A37Q9NYZ2 338 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 CSO75390 466 aaKnown RBP18.27■□□□□ 0.51
USP48-201ENST00000308271 PPM1BO75688 479 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 FSHRP23945 695 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 MRPS10P82664 201 aaKnown RBP18.27■□□□□ 0.51
USP48-201ENST00000308271 NLRP8Q86W28 1048 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 CELF5Q8N6W0 485 aaKnown RBP18.27■□□□□ 0.51
USP48-201ENST00000308271 DHRS1Q96LJ7 313 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 MTHFD2LQ9H903 347 aaPredicted RBP18.27■□□□□ 0.51
USP48-201ENST00000308271 ELOVL2Q9NXB9 296 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 BACE2Q9Y5Z0 518 aa18.27■□□□□ 0.51
USP48-201ENST00000308271 IGLV3-10A0A075B6K4 115 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 TAPBPO15533 448 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 SMAD6O43541 496 aaKnown RBP18.26■□□□□ 0.51
USP48-201ENST00000308271 C1QBP02746 253 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 SRCP12931 536 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 AK4P27144 223 aaPredicted RBP18.26■□□□□ 0.51
USP48-201ENST00000308271 ADH7P40394 386 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 CAV3P56539 151 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 ODF4Q2M2E3 257 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 NDUFAF5Q5TEU4 345 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 OR2L5Q8NG80 312 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 OR8K3Q8NH51 312 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 KLK6Q92876 244 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 MRI1Q9BV20 369 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 XKR8Q9H6D3 395 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 DDX31Q9H8H2 851 aaKnown RBP18.26■□□□□ 0.51
USP48-201ENST00000308271 C5AR2Q9P296 337 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 WRBO00258 174 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 GMFGO60234 142 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 KLK8O60259 260 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 IFNA21P01568 189 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 FYTTD1Q96QD9 318 aaKnown RBP18.26■□□□□ 0.51
USP48-201ENST00000308271 TAPBPLQ9BX59 468 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 GABARAPL3Q9BY60 117 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 CARS2Q9HA77 564 aaKnown RBP18.26■□□□□ 0.51
USP48-201ENST00000308271 KCNK6Q9Y257 313 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 TMEM189-UBE2V1I3L0A0 370 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 ADH5P11766 374 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 CD1EP15812 388 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 HLA-DMAP28067 261 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 SSTR2P30874 369 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 ACTR1BP42025 376 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 GATMP50440 423 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 ACTR1AP61163 376 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 RACK1P63244 317 aaKnown RBP18.26■□□□□ 0.51
USP48-201ENST00000308271 CCSAPQ6IQ19 270 aaPredicted RBP18.26■□□□□ 0.51
USP48-201ENST00000308271 FAM83HQ6ZRV2 1179 aaPredicted RBP18.26■□□□□ 0.51
USP48-201ENST00000308271 OR56B4Q8NH76 319 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 IGSF21Q96ID5 467 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 CDCA4Q9BXL8 241 aa18.26■□□□□ 0.51
USP48-201ENST00000308271 LOC100509620A0A075B734 347 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 CDC40O60508 579 aaKnown RBP eCLIP18.25■□□□□ 0.51
USP48-201ENST00000308271 PGAM2P15259 253 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 CXCR1P25024 350 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 RPS25P62851 125 aaKnown RBP18.25■□□□□ 0.51
USP48-201ENST00000308271 GK2Q14410 553 aaPredicted RBP18.25■□□□□ 0.51
USP48-201ENST00000308271 ARSKQ6UWY0 536 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 POGLUT1Q8NBL1 392 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 NUDT8Q8WV74 236 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 SCLYQ96I15 445 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 GRHPRQ9UBQ7 328 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 A0A0G2JMP0 313 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 PSMD9O00233 223 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 FLYWCH1Q4VC44 716 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 ACSM3Q53FZ2 586 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 NLGN4XQ8N0W4 816 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 OR4M2Q8NGB6 313 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 LKAAEAR1Q8TD35 194 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 ACOT11Q8WXI4 607 aaPredicted RBP18.25■□□□□ 0.51
USP48-201ENST00000308271 DPH7Q9BTV6 452 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 ACTL8Q9H568 366 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 PELI2Q9HAT8 420 aa18.25■□□□□ 0.51
USP48-201ENST00000308271 TMEM14AQ9Y6G1 99 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms