RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SLC31A1O15431 190 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 DDCP20711 480 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 CD9P21926 228 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 AHCYP23526 432 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 UGT2B10P36537 528 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 MAP3K8P41279 467 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 PITPNBP48739 271 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 TAS2R43P59537 309 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 E2F1Q01094 437 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 SP140Q13342 867 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 EIPR1Q53HC9 387 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 ZNF419Q96HQ0 510 aaPredicted RBP14.55□□□□□ -0.08
SHH-201ENST00000297261 DUSP21Q9H596 190 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 XKR8Q9H6D3 395 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 THSD1Q9NS62 852 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 RBFOX1Q9NWB1 397 aaKnown RBP14.55□□□□□ -0.08
SHH-201ENST00000297261 CNIH4Q9P003 139 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 SH2B3Q9UQQ2 575 aa14.55□□□□□ -0.08
SHH-201ENST00000297261 CACNB4O00305 520 aaPredicted RBP14.54□□□□□ -0.08
SHH-201ENST00000297261 PRODHO43272 600 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 MYOGP15173 224 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 IL32P24001 234 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 KLHL26Q53HC5 615 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 PLBD1Q6P4A8 553 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 B3GLCTQ6Y288 498 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 SLC44A3Q8N4M1 653 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 NATD1Q8N6N6 113 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 PROKR2Q8NFJ6 384 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 CIDECQ96AQ7 238 aaPredicted RBP14.54□□□□□ -0.08
SHH-201ENST00000297261 ADAD1Q96M93 576 aaKnown RBP14.54□□□□□ -0.08
SHH-201ENST00000297261 SAMD11Q96NU1 681 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 F2RL3Q96RI0 385 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 PRDM9Q9NQV7 894 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 CACNG2Q9Y698 323 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 CSNK1G3Q9Y6M4 447 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 LCTP09848 1927 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 SLC16A8O95907 504 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 C1GALT1C1LP0DN25 315 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 ARSBP15848 533 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 IDSP22304 550 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 ACADLP28330 430 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 IRS1P35568 1242 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 LRRC32Q14392 662 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 PLEKHS1Q5SXH7 462 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 IL20RBQ6UXL0 311 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 OR52P1PQ8NH57 321 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 SPPL3Q8TCT6 385 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 OR5P2Q8WZ92 322 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 IL17FQ96PD4 163 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 PPA2Q9H2U2 334 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 GABRR3A8MPY1 467 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 NCR1O76036 304 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 IL1AP01583 271 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 SLC35G6P0C7Q6 338 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 GTF2F2P13984 249 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 RAB3BP20337 219 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 EPHA2P29317 976 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 SPINT3P49223 89 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 TMC8Q8IU68 726 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 OR7G3Q8NG95 312 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 FAM46AQ96IP4 442 aaKnown RBP14.54□□□□□ -0.08
SHH-201ENST00000297261 SPACA7Q96KW9 195 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 SAP130Q9H0E3 1048 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 CST11Q9H112 138 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 RDH14Q9HBH5 336 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 WBP1LQ9NX94 342 aa14.54□□□□□ -0.08
SHH-201ENST00000297261 AMD1P17707 334 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 PTPN6P29350 595 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 PCGF2P35227 344 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 RPS19P39019 145 aaKnown RBP14.53□□□□□ -0.08
SHH-201ENST00000297261 HTR3AP46098 478 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 CLCNKAP51800 687 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 RRAS2P62070 204 aaPredicted RBP14.53□□□□□ -0.08
SHH-201ENST00000297261 CTF1Q16619 201 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 MSANTD1Q6ZTZ1 278 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 TMEM145Q8NBT3 493 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 GPR26Q8NDV2 337 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 PHOSPHO2Q8TCD6 241 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 CACNG3O60359 315 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 RGS9O75916 674 aaPredicted RBP14.53□□□□□ -0.08
SHH-201ENST00000297261 TACSTD2P09758 323 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 HSD3B1P14060 373 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 HSD3B2P26439 372 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 RAB30Q15771 203 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 NDUFAF5Q5TEU4 345 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 PYHIN1Q6K0P9 492 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 JAGN1Q8N5M9 183 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 OR9A1PQ8NGU1 263 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 SMPDL3AQ92484 453 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 FKBP10Q96AY3 582 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 VN1R3Q9BXE9 311 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 MKKSQ9NPJ1 570 aaPredicted RBP14.53□□□□□ -0.08
SHH-201ENST00000297261 CLEC4EQ9ULY5 219 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 A0A1B0GVI7 797 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 TMEM115Q12893 351 aaPredicted RBP14.53□□□□□ -0.08
SHH-201ENST00000297261 FCN2Q15485 313 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 SLC14A2Q15849 920 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 C3P1Q6ZMU1 363 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 QSOX2Q6ZRP7 698 aa14.53□□□□□ -0.08
SHH-201ENST00000297261 STOML3Q8TAV4 291 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms