RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 CES3Q6UWW8 571 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 DLEU7Q6UYE1 221 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 ZNF730Q6ZMV8 503 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 GPRIN3Q6ZVF9 776 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 ITPRIPQ8IWB1 547 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 FAM9CQ8IZT9 166 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 ABHD12Q8N2K0 398 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 ZNRF1Q8ND25 227 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 OR1B1Q8NGR6 318 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 PIBF1Q8WXW3 757 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 ZNF560Q96MR9 790 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 RCHY1Q96PM5 261 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 JPH2Q9BR39 696 aaPredicted RBP3.58□□□□□ -1.84
CCDC54-201ENST00000261058 DCTN5Q9BTE1 182 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 EGLN1Q9GZT9 426 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 ATG10Q9H0Y0 220 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 GLT8D2Q9H1C3 349 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 SLC26A1Q9H2B4 701 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 DCLRE1BQ9H816 532 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 DIMT1Q9UNQ2 313 aaKnown RBP3.58□□□□□ -1.84
CCDC54-201ENST00000261058 CARMIL1Q5VZK9 1371 aa3.58□□□□□ -1.84
CCDC54-201ENST00000261058 ZBED9Q6R2W3 1325 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 MYO3BQ8WXR4 1341 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 PEG3Q9GZU2 1588 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 IQANK1A0A1B0GTG1 560 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 MFSD2BA6NFX1 497 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 IGLON5A6NGN9 336 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 FAM47DPA6NHR8 397 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 PDLIM1O00151 329 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 NDUFAB1O14561 156 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 TBX19O60806 448 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 CALCAP01258 141 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 IVLP07476 585 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 ANXA8P13928 327 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 CD1DP15813 335 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 CALB2P22676 271 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 LMO2P25791 158 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 CHMLP26374 656 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 CAPGP40121 348 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 CCT6AP40227 531 aaKnown RBP3.57□□□□□ -1.84
CCDC54-201ENST00000261058 HAAOP46952 286 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 SLC1A6P48664 564 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 FNTAP49354 379 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 ATP4BP51164 291 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 AP3M2P53677 418 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 UBE2HP62256 183 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 HERV-K104P63124 156 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 CEBPEQ15744 281 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 C1orf185Q5T7R7 199 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 ANXA8L1Q5VT79 327 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 NKAIN2Q5VXU1 208 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 CLEC2AQ6UVW9 174 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 CDHR3Q6ZTQ4 885 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 STXBP4Q6ZWJ1 553 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 LRRC70Q7Z2Q7 622 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 NUFIP2Q7Z417 695 aaKnown RBP3.57□□□□□ -1.84
CCDC54-201ENST00000261058 SLC22A16Q86VW1 577 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 RNF130Q86XS8 419 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 TTC5Q8N0Z6 440 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 PARP8Q8N3A8 854 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 LEMD2Q8NC56 503 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 CCNYQ8ND76 341 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 PCNPQ8WW12 178 aaKnown RBP3.57□□□□□ -1.84
CCDC54-201ENST00000261058 P3H4Q92791 437 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 NCLNQ969V3 563 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 MRPL24Q96A35 216 aaKnown RBP3.57□□□□□ -1.84
CCDC54-201ENST00000261058 RAB39BQ96DA2 213 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 PSKH2Q96QS6 385 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 TNFRSF13CQ96RJ3 184 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 SECISBP2Q96T21 854 aaKnown RBP3.57□□□□□ -1.84
CCDC54-201ENST00000261058 RIOK1Q9BRS2 568 aaKnown RBP3.57□□□□□ -1.84
CCDC54-201ENST00000261058 CHCHD5Q9BSY4 110 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 STRADBQ9C0K7 418 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 EXO5Q9H790 373 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 PSTPIP2Q9H939 334 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 FARSBQ9NSD9 589 aaKnown RBP3.57□□□□□ -1.84
CCDC54-201ENST00000261058 GTSE1Q9NYZ3 720 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 EMC3Q9P0I2 261 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 NARFQ9UHQ1 456 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 MRTO4Q9UKD2 239 aaKnown RBP3.57□□□□□ -1.84
CCDC54-201ENST00000261058 NPC1L1Q9UHC9 1359 aa3.57□□□□□ -1.84
CCDC54-201ENST00000261058 PTPRUQ92729 1446 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 TRGV8A0A0C4DH27 118 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 IGHV3-16A0A0C4DH30 117 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 LOC390937A0A1W2PQ73 354 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 OR6C65A6NJZ3 312 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 ZNF716A6NP11 495 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 CHEK1O14757 476 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 ARPC1BO15143 372 aaKnown RBP3.56□□□□□ -1.84
CCDC54-201ENST00000261058 MAPK13O15264 365 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 TSPAN2O60636 221 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 LRP3O75074 770 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 SCGB2A1O75556 95 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 SURF6O75683 361 aaKnown RBP3.56□□□□□ -1.84
CCDC54-201ENST00000261058 NEBLO76041 1014 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 POP4O95707 220 aaKnown RBP3.56□□□□□ -1.84
CCDC54-201ENST00000261058 PGK2P07205 417 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 HCKP08631 526 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 ZNF735P0CB33 412 aa3.56□□□□□ -1.84
CCDC54-201ENST00000261058 TROVE2P10155 538 aaKnown RBP eCLIP3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms