RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 RAB3BP20337 219 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 SLC5A12Q1EHB4 618 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 MPP7Q5T2T1 576 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 SFRP4Q6FHJ7 346 aaPredicted RBP13.28□□□□□ -0.28
CPSF1-212ENST00000616140 SYNPOQ8N3V7 929 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 ACOT12Q8WYK0 555 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 SLC41A3Q96GZ6 507 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 MACROD1Q9BQ69 325 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 CLSTN3Q9BQT9 956 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 ACTRT3Q9BYD9 372 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 ATG5Q9H1Y0 275 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 CD93Q9NPY3 652 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 CEP290O15078 2479 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 HTR3EA5X5Y0 456 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 TRAPPC6AO75865 159 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 ALPLP05186 524 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 DDCP20711 480 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 ACTA2P62736 377 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 ACTG2P63267 376 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 SPIN3Q5JUX0 258 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 Q6ZSR9 355 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF283Q8N7M2 679 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 LSM14AQ8ND56 463 aaKnown RBP13.28□□□□□ -0.28
CPSF1-212ENST00000616140 TGM7Q96PF1 710 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 CNN2Q99439 309 aaKnown RBP13.28□□□□□ -0.28
CPSF1-212ENST00000616140 SLC46A2Q9BY10 475 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 ARL6Q9H0F7 186 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF304Q9HCX3 659 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 GMEB2Q9UKD1 530 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 PLCL2Q9UPR0 1127 aa13.28□□□□□ -0.28
CPSF1-212ENST00000616140 RGS9O75916 674 aaPredicted RBP13.27□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF806P0C7X5 589 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 C5AR1P21730 350 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 NTSR1P30989 418 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 SNRPD2P62316 118 aaKnown RBP13.27□□□□□ -0.28
CPSF1-212ENST00000616140 PLCXD2Q0VAA5 305 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 ELOCQ15369 112 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 DEFB110Q30KQ9 67 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF761Q86XN6 746 aaPredicted RBP13.27□□□□□ -0.28
CPSF1-212ENST00000616140 GDPD1Q8N9F7 314 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 ITPKCQ96DU7 683 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 PEX11GQ96HA9 241 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 PDLIM5Q96HC4 596 aaKnown RBP13.27□□□□□ -0.28
CPSF1-212ENST00000616140 GPR174Q9BXC1 333 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 DPH1Q9BZG8 443 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 FOLH1BQ9HBA9 442 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 RXFP3Q9NSD7 469 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 MGAT4CQ9UBM8 478 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 LRRTM2O43300 516 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 NUDT7P0C024 238 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 H2BFMP0C1H6 154 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 CCNOP22674 350 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 CERS1P27544 350 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 AOAHP28039 575 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 ERP29P30040 261 aaKnown RBP13.27□□□□□ -0.28
CPSF1-212ENST00000616140 BMPR1AP36894 532 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 FRKP42685 505 aaPredicted RBP13.27□□□□□ -0.28
CPSF1-212ENST00000616140 NADSYN1Q6IA69 706 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 USP53Q70EK8 1073 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 CBLL1Q75N03 491 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 CCDC28AQ8IWP9 274 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 PGBD5Q8N414 524 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 TMEM102Q8N9M5 508 aaPredicted RBP13.27□□□□□ -0.28
CPSF1-212ENST00000616140 COQ8AQ8NI60 647 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 TESCQ96BS2 214 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 MAELQ96JY0 434 aaKnown RBP13.27□□□□□ -0.28
CPSF1-212ENST00000616140 ZC3H10Q96K80 434 aaKnown RBP13.27□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF583Q96ND8 569 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 SFXN1Q9H9B4 322 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 APOBEC3BQ9UH17 382 aaKnown RBP13.27□□□□□ -0.28
CPSF1-212ENST00000616140 ARID1AO14497 2285 aa13.27□□□□□ -0.28
CPSF1-212ENST00000616140 HYKKA2RU49 373 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF26P17031 533 aaPredicted RBP13.27□□□□□ -0.29
CPSF1-212ENST00000616140 JUNDP17535 347 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 HBA1P69905 142 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 HOXC5Q00444 222 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 RNF111Q6ZNA4 994 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 DCDC5Q6ZRR9 648 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF584Q8IVC4 421 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 SLC39A11Q8N1S5 342 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 CREB3L4Q8TEY5 395 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 MSANTD3Q96H12 275 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 RANBP3Q9H6Z4 567 aaPredicted RBP13.27□□□□□ -0.29
CPSF1-212ENST00000616140 MCCC2Q9HCC0 563 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 DZANK1Q9NVP4 752 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 HEMK1Q9Y5R4 338 aaPredicted RBP13.27□□□□□ -0.29
CPSF1-212ENST00000616140 TCRBV21S2A2A0A5A6 115 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 POU4F2Q12837 409 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 OCLNQ16625 522 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 LMNTD1Q8N9Z9 388 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 SYT14Q8NB59 555 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 DAZLQ92904 295 aaKnown RBP13.27□□□□□ -0.29
CPSF1-212ENST00000616140 ZDHHC12Q96GR4 267 aa13.27□□□□□ -0.29
CPSF1-212ENST00000616140 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 A0A1W2PPL8 197 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 F5H0A9 414 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 PRLP01236 227 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 CXCR4P61073 352 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 HNRNPA1L2Q32P51 320 aaKnown RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 DESI1Q6ICB0 168 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms