RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 IL12BP29460 328 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 SSTR4P31391 388 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 STX2P32856 288 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 IDUAP35475 653 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 UGT2B10P36537 528 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 ARL1P40616 181 aaPredicted RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 PAFAH1B1P43034 410 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 PTH2RP49190 550 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 LHX2P50458 406 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 PGGT1BP53609 377 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 MAPK12P53778 367 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 PNLIPRP2P54317 469 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 ALDH18A1P54886 795 aaKnown RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 PSMD4P55036 377 aaKnown RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 WNT3P56703 355 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 TRA2BP62995 288 aaKnown RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 CAV1Q03135 178 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 SRYQ05066 204 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 DMTNQ08495 405 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 FOXF2Q12947 444 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 ACAP2Q15057 778 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 OR4D1Q15615 310 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 ERCC6LQ2NKX8 1250 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 GLYR1Q49A26 553 aaPredicted RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 HP1BP3Q5SSJ5 553 aaPredicted RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 CCNYL2Q5T2Q4 361 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 PRAMEF9Q5VWM5 478 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 TTC19Q6DKK2 380 aaPredicted RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 HEPHL1Q6MZM0 1159 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 SLC48A1Q6P1K1 146 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 TMEM64Q6YI46 380 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 DGAT2L6Q6ZPD8 337 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 ISCA2Q86U28 154 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 STK32CQ86UX6 486 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 PRIMA1Q86XR5 153 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 CTAGE3PQ8IX95 158 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 GCNT2Q8N0V5 402 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 C17orf53Q8N3J3 647 aaPredicted RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 ZNF611Q8N823 705 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 L3MBTL4Q8NA19 623 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 OR4K17Q8NGC6 315 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 TMEM158Q8WZ71 300 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 EXT2Q93063 718 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 HGDQ93099 445 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 ESAMQ96AP7 390 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 CTHRC1Q96CG8 243 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 OMA1Q96E52 524 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 PGM2Q96G03 612 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 SLC35A4Q96G79 324 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 ATOH8Q96SQ7 321 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 MDFIQ99750 246 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 ELOVL6Q9H5J4 265 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 IPPKQ9H8X2 491 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 BARX1Q9HBU1 254 aaPredicted RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 GLRX2Q9NS18 164 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 GIMAP4Q9NUV9 329 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 ZNF701Q9NV72 531 aaPredicted RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 TRMT1Q9NXH9 659 aaKnown RBP5.7□□□□□ -1.5
CUX1-220ENST00000607092 PROCRQ9UNN8 238 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 WIF1Q9Y5W5 379 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 USF3Q68DE3 2245 aa5.7□□□□□ -1.5
CUX1-220ENST00000607092 ABCA1O95477 2261 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 CCDC151A5D8V7 595 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 FRG2CA6NGY1 282 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 LRRC14BA6NHZ5 514 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 FAM159BA6NKW6 160 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 TTC36A6NLP5 189 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 KIAA1324LA8MWY0 1029 aaPredicted RBP5.69□□□□□ -1.5
CUX1-220ENST00000607092 DEFB108AA8MXU0 73 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 TMPRSS11DO60235 418 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 LILRA1O75019 489 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 EEDO75530 441 aaKnown RBP5.69□□□□□ -1.5
CUX1-220ENST00000607092 ERAL1O75616 437 aaKnown RBP5.69□□□□□ -1.5
CUX1-220ENST00000607092 REM1O75628 298 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 PLGP00747 810 aaPredicted RBP5.69□□□□□ -1.5
CUX1-220ENST00000607092 CLPSP04118 112 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 GSTM5P46439 218 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 SLCO1A2P46721 670 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 NEK2P51955 445 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 CCNG1P51959 295 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 ATP5J2P56134 94 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 CTBP2P56545 445 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 CLDN18P56856 261 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 RPS4XP62701 263 aaKnown RBP5.69□□□□□ -1.5
CUX1-220ENST00000607092 HMGCS1Q01581 520 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 FAM27E3Q08E93 113 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 GTF2H2Q13888 395 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 CPSF6Q16630 551 aaKnown RBP eCLIP5.69□□□□□ -1.5
CUX1-220ENST00000607092 PFKFB4Q16877 469 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 FBXO48Q5FWF7 155 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 TCHHL1Q5QJ38 904 aaPredicted RBP5.69□□□□□ -1.5
CUX1-220ENST00000607092 DCST1Q5T197 706 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 FRG2Q64ET8 278 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 BICRALQ6AI39 1079 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 GTF2IRD2BQ6EKJ0 949 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 GTF2H2CQ6P1K8 395 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 C3orf62Q6ZUJ4 267 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 SH2D5Q6ZV89 423 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 FAM214BQ7L5A3 538 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 MTERF4Q7Z6M4 381 aaKnown RBP5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms