RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 ABCB7O75027 752 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 CBR3O75828 277 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 FGF4P08620 206 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 IGFBP2P18065 325 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 TACR1P25103 407 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 PNLIPRP2P54317 469 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 IFFO1Q0D2I5 559 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 NHSL2Q5HYW2 709 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 RIPPLY2Q5TAB7 128 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 NPSR1Q6W5P4 371 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 YRDCQ86U90 279 aaKnown RBP13.75□□□□□ -0.21
LIG1-215ENST00000597901 SLC44A2Q8IWA5 706 aaPredicted RBP13.75□□□□□ -0.21
LIG1-215ENST00000597901 FAM83FQ8NEG4 500 aaPredicted RBP13.75□□□□□ -0.21
LIG1-215ENST00000597901 OR4N2Q8NGD1 307 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 AENQ8WTP8 325 aaKnown RBP13.75□□□□□ -0.21
LIG1-215ENST00000597901 C14orf79Q96F83 325 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 APOPT1Q96IL0 206 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 LURAP1Q96LR2 239 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 AMDHD1Q96NU7 426 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 OSBPL11Q9BXB4 747 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 UGT2B28Q9BY64 529 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 TUBB1Q9H4B7 451 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 LRTM1Q9HBL6 345 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 MKS1Q9NXB0 559 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 KLRF1Q9NZS2 232 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 SENP1Q9P0U3 644 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 SLC17A7Q9P2U7 560 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 LGALS13Q9UHV8 139 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 C19orf53Q9UNZ5 99 aaPredicted RBP13.75□□□□□ -0.21
LIG1-215ENST00000597901 FIS1Q9Y3D6 152 aa13.75□□□□□ -0.21
LIG1-215ENST00000597901 PRAMEF25A6NGN4 478 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 SPAG7O75391 227 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 LINC00032P0C843 101 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 MSX1P28360 303 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 KRT20P35900 424 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 PSPHP78330 225 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 PSG6Q00889 435 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 EFR3AQ14156 821 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 SF3B4Q15427 424 aaKnown RBP eCLIP13.74□□□□□ -0.212e-7■■■■■ 50
LIG1-215ENST00000597901 UGT3A2Q3SY77 523 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 RFTN2Q52LD8 501 aaPredicted RBP13.74□□□□□ -0.21
LIG1-215ENST00000597901 RNF165Q6ZSG1 346 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 IKBIPQ70UQ0 350 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 LARP4Q71RC2 724 aaKnown RBP eCLIP13.74□□□□□ -0.21
LIG1-215ENST00000597901 CLYBLQ8N0X4 340 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 OR2T11Q8NH01 316 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 ABTB1Q969K4 478 aaPredicted RBP13.74□□□□□ -0.21
LIG1-215ENST00000597901 ELP4Q96EB1 424 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 WDYHV1Q96HA8 205 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 FAM111AQ96PZ2 611 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 PRDM14Q9GZV8 571 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 SERHLQ9NQF3 203 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 MAPRE3Q9UPY8 281 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 TRAF6Q9Y4K3 522 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 DNAJC15Q9Y5T4 150 aa13.74□□□□□ -0.21
LIG1-215ENST00000597901 HSPB2A8KAH6 182 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 KDM4EB2RXH2 506 aaPredicted RBP13.73□□□□□ -0.21
LIG1-215ENST00000597901 UPK1AO00322 258 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 NPHS1O60500 1241 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 COQ9O75208 318 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 SLITRK5O94991 958 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 SLU7O95391 586 aaKnown RBP13.73□□□□□ -0.21
LIG1-215ENST00000597901 CHEK2O96017 543 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 ACTL6AO96019 429 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 CHRNGP07510 517 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 CREB1P16220 341 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 CEACAM8P31997 349 aaPredicted RBP13.73□□□□□ -0.21
LIG1-215ENST00000597901 MC3RP41968 323 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 KRTAP10-9P60411 292 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 TLE4Q04727 773 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 GAB1Q13480 694 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 HSPB2Q16082 182 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 ARL13AQ5H913 290 aaPredicted RBP13.73□□□□□ -0.21
LIG1-215ENST00000597901 KANK2Q63ZY3 851 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 WDR93Q6P2C0 686 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 EMBQ6PCB8 327 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 TMEM107Q6UX40 140 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 PLCZ1Q86YW0 608 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 HOMEZQ8IX15 550 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 DMRTC2Q8IXT2 367 aaPredicted RBP13.73□□□□□ -0.21
LIG1-215ENST00000597901 PM20D2Q8IYS1 436 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 TNIP2Q8NFZ5 429 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 TCP10LQ8TDR4 215 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 GFM2Q969S9 779 aaKnown RBP13.73□□□□□ -0.21
LIG1-215ENST00000597901 FCRL1Q96LA6 429 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 EML4Q9HC35 981 aaKnown RBP13.73□□□□□ -0.21
LIG1-215ENST00000597901 BAIAP2L1Q9UHR4 511 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 CAMK2AQ9UQM7 478 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 OR10H1Q9Y4A9 318 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 NINQ8N4C6 2090 aa13.73□□□□□ -0.21
LIG1-215ENST00000597901 AKAP10O43572 662 aa13.72□□□□□ -0.21
LIG1-215ENST00000597901 IL12BP29460 328 aa13.72□□□□□ -0.21
LIG1-215ENST00000597901 NTSP30990 170 aa13.72□□□□□ -0.21
LIG1-215ENST00000597901 TIMP3P35625 211 aa13.72□□□□□ -0.21
LIG1-215ENST00000597901 WNT3P56703 355 aa13.72□□□□□ -0.21
LIG1-215ENST00000597901 MRPS22P82650 360 aaKnown RBP13.72□□□□□ -0.21
LIG1-215ENST00000597901 SLC25A35Q3KQZ1 300 aa13.72□□□□□ -0.21
LIG1-215ENST00000597901 CYP27C1Q4G0S4 372 aa13.72□□□□□ -0.21
LIG1-215ENST00000597901 ACSF3Q4G176 576 aaPredicted RBP13.72□□□□□ -0.21
LIG1-215ENST00000597901 SH2D4BQ5SQS7 431 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms