RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 HIPK4Q8NE63 616 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 NUBPLQ8TB37 319 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 FBXO30Q8TB52 745 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 M1APQ8TC57 530 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 ELP5Q8TE02 316 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 SLC38A5Q8WUX1 472 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 SLC9A6Q92581 669 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 JADE3Q92613 823 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 MAL2Q969L2 176 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 IP6K3Q96PC2 410 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 GORASP2Q9H8Y8 452 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 BCL2L10Q9HD36 194 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 EXD2Q9NVH0 621 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 EGFL7Q9UHF1 273 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 PCDHGB3Q9Y5G1 929 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 MRPS18BQ9Y676 258 aaKnown RBP14.97□□□□□ -0.01
SS18-211ENST00000578954 KCNE3Q9Y6H6 103 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 SPTBN4Q9H254 2564 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 DCHS1Q96JQ0 3298 aa14.97□□□□□ -0.01
SS18-211ENST00000578954 A8MVJ9 347 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 CXCR6O00574 342 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 TO15178 435 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 LIFP15018 202 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 SPINK2P20155 84 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 DRD5P21918 477 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 OTX2P32243 289 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 CLCN2P51788 898 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 ACTR3P61158 418 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 PSPHP78330 225 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 CLN3Q13286 438 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 GNA13Q14344 377 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 ARHGAP11BQ3KRB8 267 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 INTS11Q5TA45 600 aaKnown RBP14.96□□□□□ -0.01
SS18-211ENST00000578954 C1orf146Q5VVC0 180 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 GLYATQ6IB77 296 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 SLC29A4Q7RTT9 530 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 WDR53Q7Z5U6 358 aaPredicted RBP14.96□□□□□ -0.01
SS18-211ENST00000578954 NFKBIDQ8NI38 313 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 WDR60Q8WVS4 1066 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 XAGE5Q8WWM1 108 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 PCSK5Q92824 1860 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 CDS1Q92903 461 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 OTUB1Q96FW1 271 aaPredicted RBP14.96□□□□□ -0.01
SS18-211ENST00000578954 TMEM19Q96HH6 336 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 TRNT1Q96Q11 434 aaKnown RBP14.96□□□□□ -0.01
SS18-211ENST00000578954 BTBD2Q9BX70 525 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 WWTR1Q9GZV5 400 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 DENND2DQ9H6A0 471 aaPredicted RBP14.96□□□□□ -0.01
SS18-211ENST00000578954 MMP25Q9NPA2 562 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 DKK4Q9UBT3 224 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 ANGPT4Q9Y264 503 aa14.96□□□□□ -0.01
SS18-211ENST00000578954 DSPPQ9NZW4 1301 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 NSG1A0A0A6YYJ2 146 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 FRG2CA6NGY1 282 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 GCM2O75603 506 aaPredicted RBP14.95□□□□□ -0.02
SS18-211ENST00000578954 BCHEP06276 602 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 ATP6V1B2P21281 511 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 GABRA3P34903 492 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 CRISP3P54108 245 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 POLE2P56282 527 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 RNF4P78317 190 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 DMTNQ08495 405 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 FLOT2Q14254 428 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 CRTC2Q53ET0 693 aaPredicted RBP14.95□□□□□ -0.02
SS18-211ENST00000578954 MTX3Q5HYI7 312 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 ATAD3BQ5T9A4 648 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 REEP3Q6NUK4 255 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 HSDL2Q6YN16 418 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 LRRC74BQ6ZQY2 392 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 DHFR2Q86XF0 187 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 COX18Q8N8Q8 333 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 ANKFN1Q8N957 763 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 SNIP1Q8TAD8 396 aaKnown RBP14.95□□□□□ -0.02
SS18-211ENST00000578954 FAM110BQ8TC76 370 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 TP53INP1Q96A56 240 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 LCORQ96JN0 433 aaPredicted RBP14.95□□□□□ -0.02
SS18-211ENST00000578954 ZNF350Q9GZX5 532 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 Q9N2J8 555 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 POLE3Q9NRF9 147 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 RYDENQ9NUL5 291 aaKnown RBP14.95□□□□□ -0.02
SS18-211ENST00000578954 P4HTMQ9NXG6 502 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 CALML5Q9NZT1 146 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 FBXL4Q9UKA2 621 aa14.95□□□□□ -0.02
SS18-211ENST00000578954 RRP15Q9Y3B9 282 aaKnown RBP14.95□□□□□ -0.02
SS18-211ENST00000578954 TRBV11-1A0A0K0K1C0 115 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 C2orf92A0A1B0GVN3 265 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 TMEM247A6NEH6 219 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 AQP12BA6NM10 295 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 GSTA4O15217 222 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 ACOX3O15254 700 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 PRKNO60260 465 aaPredicted RBP14.94□□□□□ -0.02
SS18-211ENST00000578954 PGM3O95394 542 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 CHRM4P08173 479 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 ADRB1P08588 477 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 NR2F1P10589 423 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 NCK1P16333 377 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 PIGAP37287 484 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 CRYBA2P53672 197 aa14.94□□□□□ -0.02
SS18-211ENST00000578954 POU6F2P78424 691 aaPredicted RBP14.94□□□□□ -0.02
SS18-211ENST00000578954 ELOAQ14241 798 aaKnown RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms