RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 FAM53CQ9NYF3 392 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 CNOT11Q9UKZ1 510 aaKnown RBP17.98■□□□□ 0.47
CLN3-225ENST00000566824 PCDHGB6Q9Y5F9 930 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 ACOX3O15254 700 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 PEX1O43933 1283 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 UGT2B11O75310 529 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 PPM1BO75688 479 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 IGKV1D-16P01601 117 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 HMGN2P05204 90 aaKnown RBP17.98■□□□□ 0.47
CLN3-225ENST00000566824 NCF2P19878 526 aaPredicted RBP17.98■□□□□ 0.47
CLN3-225ENST00000566824 GABRA3P34903 492 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 SOAT1P35610 550 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 PLCXD2Q0VAA5 305 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 DPY19L1Q2PZI1 675 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 SPDYE7PQ495Y7 208 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 TIGD2Q4W5G0 525 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 ANXA8L1Q5VT79 327 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 PRAMEF20Q5VT98 475 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 SLC34A3Q8N130 599 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 GLB1L3Q8NCI6 653 aaPredicted RBP17.98■□□□□ 0.47
CLN3-225ENST00000566824 PAQR8Q8TEZ7 354 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 CCDC115Q96NT0 180 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 MS4A4EQ96PG1 132 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 TIMMDC1Q9NPL8 285 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 SLC52A3Q9NQ40 469 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 FAM120CQ9NX05 1096 aaKnown RBP17.98■□□□□ 0.47
CLN3-225ENST00000566824 KCNE3Q9Y6H6 103 aa17.98■□□□□ 0.47
CLN3-225ENST00000566824 RP1L1Q8IWN7 2480 aaPredicted RBP17.97■□□□□ 0.47
CLN3-225ENST00000566824 FAM234BA2RU67 622 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 ASPDHA6ND91 283 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 TSPAN2O60636 221 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 RASAL1O95294 804 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 GSNP06396 782 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 TROVE2P10155 538 aaKnown RBP eCLIP17.97■□□□□ 0.47
CLN3-225ENST00000566824 MST1P26927 711 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 DNASE1L1P49184 302 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 MEOX1P50221 254 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 CASP9P55211 416 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 NRG3P56975 720 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 RPS26P62854 115 aaKnown RBP17.97■□□□□ 0.47
CLN3-225ENST00000566824 TP53BP2Q13625 1128 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 LASP1Q14847 261 aaKnown RBP17.97■□□□□ 0.47
CLN3-225ENST00000566824 DUSP5Q16690 384 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 GALNT10Q86SR1 603 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 GOLM1Q8NBJ4 401 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 TMEM178AQ8NBL3 297 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 SFXN5Q8TD22 340 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 SLC9A6Q92581 669 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 EFHD2Q96C19 240 aaPredicted RBP17.97■□□□□ 0.47
CLN3-225ENST00000566824 SGCZQ96LD1 299 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 FRMD6Q96NE9 622 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 NODALQ96S42 347 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 BARD1Q99728 777 aaKnown RBP17.97■□□□□ 0.47
CLN3-225ENST00000566824 SIKE1Q9BRV8 207 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 FLRT3Q9NZU0 649 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 BTNL2Q9UIR0 455 aa17.97■□□□□ 0.47
CLN3-225ENST00000566824 RNF103-CHMP3A0A140T963 221 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 REM1O75628 298 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 NKX2-2O95096 273 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 IL6P05231 212 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 MAN2A2P49641 1150 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 ATP4BP51164 291 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 ARFIP2P53365 341 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 STX1BP61266 288 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 PRR5P85299 388 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 AGKQ53H12 422 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 SLC22A10Q63ZE4 541 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 ZNF324BQ6AW86 544 aaPredicted RBP17.96■□□□□ 0.46
CLN3-225ENST00000566824 BLOC1S3Q6QNY0 202 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 C6orf120Q7Z4R8 191 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 ZNF605Q86T29 641 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 BCORP1Q8N888 145 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 OR2M7Q8NG81 312 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 GOT1L1Q8NHS2 421 aaPredicted RBP17.96■□□□□ 0.46
CLN3-225ENST00000566824 SPPL2AQ8TCT8 520 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 C10orf82Q8WW14 230 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 MIB2Q96AX9 1013 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 CHMP6Q96FZ7 201 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 SLC35A4Q96G79 324 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 ADOQ96SZ5 270 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 TSPAN10Q9H1Z9 355 aaPredicted RBP17.96■□□□□ 0.46
CLN3-225ENST00000566824 NEUROD4Q9HD90 331 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 SACM1LQ9NTJ5 587 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 FBXO34Q9NWN3 711 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 CCDC167Q9P0B6 97 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 KLF13Q9Y2Y9 288 aaPredicted RBP17.96■□□□□ 0.46
CLN3-225ENST00000566824 OR10H1Q9Y4A9 318 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 HRH3Q9Y5N1 445 aa17.96■□□□□ 0.46
CLN3-225ENST00000566824 FREM3P0C091 2139 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 NR5A2O00482 541 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 PLA2G2AP14555 144 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 NAGAP17050 411 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 CAPN3P20807 821 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 CNR1P21554 472 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 LSP1P33241 339 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 SQLEQ14534 574 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 GTDC1Q4AE62 458 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 SLC2A7Q6PXP3 512 aa17.95■□□□□ 0.46
CLN3-225ENST00000566824 DNAJC14Q6Y2X3 702 aaPredicted RBP17.95■□□□□ 0.46
CLN3-225ENST00000566824 GK5Q6ZS86 529 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms