RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CHEK2O96017 543 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 LINC00032P0C843 101 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 BMP7P18075 431 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 ALDH3A1P30838 453 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 NTSP30990 170 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 TFF3Q07654 80 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 EFR3AQ14156 821 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 KIAA0040Q15053 153 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 SF3B4Q15427 424 aaKnown RBP eCLIP18.92■□□□□ 0.62
CLN3-219ENST00000565778 SH2D4BQ5SQS7 431 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 VASNQ6EMK4 673 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 IKBIPQ70UQ0 350 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 LARP4Q71RC2 724 aaKnown RBP eCLIP18.92■□□□□ 0.62
CLN3-219ENST00000565778 LIX1LQ8IVB5 337 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 ACBD4Q8NC06 268 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 FAM83FQ8NEG4 500 aaPredicted RBP18.92■□□□□ 0.62
CLN3-219ENST00000565778 ABTB1Q969K4 478 aaPredicted RBP18.92■□□□□ 0.62
CLN3-219ENST00000565778 LURAP1Q96LR2 239 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 FAM111AQ96PZ2 611 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 ROPN1BQ9BZX4 212 aaPredicted RBP18.92■□□□□ 0.62
CLN3-219ENST00000565778 GLIPR2Q9H4G4 154 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 ROPN1Q9HAT0 212 aaPredicted RBP18.92■□□□□ 0.62
CLN3-219ENST00000565778 SERHLQ9NQF3 203 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 NPDC1Q9NQX5 325 aaPredicted RBP18.92■□□□□ 0.62
CLN3-219ENST00000565778 MKS1Q9NXB0 559 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 NCKAP5O14513 1909 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 TSPAN2O60636 221 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 EPPINO95925 133 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 MSX1P28360 303 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 GCKP35557 465 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 MC3RP41968 323 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 PNLIPRP2P54317 469 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 PSPHP78330 225 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 TLE4Q04727 773 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 ZNF155Q12901 538 aaPredicted RBP18.91■□□□□ 0.62
CLN3-219ENST00000565778 TMEM107Q6UX40 140 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 NPSR1Q6W5P4 371 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 Q6ZSR9 355 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 WDR53Q7Z5U6 358 aaPredicted RBP18.91■□□□□ 0.62
CLN3-219ENST00000565778 CLYBLQ8N0X4 340 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 OR4N2Q8NGD1 307 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 GFM2Q969S9 779 aaKnown RBP18.91■□□□□ 0.62
CLN3-219ENST00000565778 C14orf79Q96F83 325 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 SLC35A4Q96G79 324 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 UGT2B28Q9BY64 529 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 SLC17A7Q9P2U7 560 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 C19orf53Q9UNZ5 99 aaPredicted RBP18.91■□□□□ 0.62
CLN3-219ENST00000565778 PKDREJQ9NTG1 2253 aa18.91■□□□□ 0.62
CLN3-219ENST00000565778 PHF3Q92576 2039 aaKnown RBP18.91■□□□□ 0.62
CLN3-219ENST00000565778 LRBAP50851 2863 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 A0A087WV62 115 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 HSPB2A8KAH6 182 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 SLITRK5O94991 958 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 PRPH2P23942 346 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 TACR1P25103 407 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 MRPS22P82650 360 aaKnown RBP18.9■□□□□ 0.62
CLN3-219ENST00000565778 HSPB2Q16082 182 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 NHSL2Q5HYW2 709 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 PLCZ1Q86YW0 608 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 HOMEZQ8IX15 550 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 WDSUB1Q8N9V3 476 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 OR14L1PQ8NHC6 308 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 TCP10LQ8TDR4 215 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 EFHD2Q96C19 240 aaPredicted RBP18.9■□□□□ 0.62
CLN3-219ENST00000565778 ELP4Q96EB1 424 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 AMDHD1Q96NU7 426 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 TREX2Q9BQ50 279 aaPredicted RBP18.9■□□□□ 0.62
CLN3-219ENST00000565778 MECRQ9BV79 373 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 PRDM14Q9GZV8 571 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 TUBB1Q9H4B7 451 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 EML4Q9HC35 981 aaKnown RBP18.9■□□□□ 0.62
CLN3-219ENST00000565778 DDX18Q9NVP1 670 aaKnown RBP18.9■□□□□ 0.62
CLN3-219ENST00000565778 LGALS13Q9UHV8 139 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 TRAF6Q9Y4K3 522 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 CACNA1CQ13936 2221 aa18.9■□□□□ 0.62
CLN3-219ENST00000565778 APCP25054 2843 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 UPK1AO00322 258 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 PLOD2O00469 737 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 AKAP10O43572 662 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 NPHS1O60500 1241 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 SLU7O95391 586 aaKnown RBP18.89■□□□□ 0.61
CLN3-219ENST00000565778 ACTL6AO96019 429 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 NEFHP12036 1026 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 IGFBP2P18065 325 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 SLC25A35Q3KQZ1 300 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 ACSF3Q4G176 576 aaPredicted RBP18.89■□□□□ 0.61
CLN3-219ENST00000565778 ARL13AQ5H913 290 aaPredicted RBP18.89■□□□□ 0.61
CLN3-219ENST00000565778 OR5M10Q6IEU7 315 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 EMBQ6PCB8 327 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 SEM1Q6ZVN7 128 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 DDIASQ8IXT1 998 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 DMRTC2Q8IXT2 367 aaPredicted RBP18.89■□□□□ 0.61
CLN3-219ENST00000565778 OR2T11Q8NH01 316 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 AENQ8WTP8 325 aaKnown RBP18.89■□□□□ 0.61
CLN3-219ENST00000565778 WDYHV1Q96HA8 205 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 DNAJC15Q9Y5T4 150 aa18.89■□□□□ 0.61
CLN3-219ENST00000565778 NPIPB8E9PQR5 432 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 IL2RAP01589 272 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 CHRNGP07510 517 aa18.88■□□□□ 0.61
CLN3-219ENST00000565778 FGF4P08620 206 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms