RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 VPS50Q96JG6 964 aa9.59□□□□□ -0.87
USP3-219ENST00000561326 LMF2Q9BU23 707 aaKnown RBP9.59□□□□□ -0.87
USP3-219ENST00000561326 BDH2Q9BUT1 245 aa9.59□□□□□ -0.87
USP3-219ENST00000561326 FAM117AQ9C073 453 aa9.59□□□□□ -0.87
USP3-219ENST00000561326 OR8D2Q9GZM6 311 aa9.59□□□□□ -0.87
USP3-219ENST00000561326 SOX17Q9H6I2 414 aaPredicted RBP9.59□□□□□ -0.87
USP3-219ENST00000561326 FOLH1BQ9HBA9 442 aa9.59□□□□□ -0.87
USP3-219ENST00000561326 Q9N2J8 555 aa9.59□□□□□ -0.87
USP3-219ENST00000561326 POLE3Q9NRF9 147 aa9.59□□□□□ -0.87
USP3-219ENST00000561326 SEC14L3Q9UDX4 400 aa9.59□□□□□ -0.87
USP3-219ENST00000561326 MRTO4Q9UKD2 239 aaKnown RBP9.59□□□□□ -0.87
USP3-219ENST00000561326 SATB2Q9UPW6 733 aa9.59□□□□□ -0.87
USP3-219ENST00000561326 OR6C76A6NM76 312 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 A8MVJ9 347 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 GNGT2O14610 69 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 CLOCKO15516 846 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 GCM2O75603 506 aaPredicted RBP9.58□□□□□ -0.88
USP3-219ENST00000561326 TIPRLO75663 272 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 NKX2-2O95096 273 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 MFN2O95140 757 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 H6PDO95479 791 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 GUSBP08236 651 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 RAB40ALP0C0E4 278 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 ACP2P11117 423 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 ITGA2P17301 1181 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 ATP6V1C1P21283 382 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 SOX18P35713 384 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 VHLP40337 213 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 MAP3K8P41279 467 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 PPICP45877 212 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 PTDSS1P48651 473 aaKnown RBP9.58□□□□□ -0.88
USP3-219ENST00000561326 RPS15P62841 145 aaKnown RBP9.58□□□□□ -0.88
USP3-219ENST00000561326 PSPHP78330 225 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 TARDBPQ13148 414 aaKnown RBP eCLIP9.58□□□□□ -0.88
USP3-219ENST00000561326 IFI44LQ53G44 452 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 SFT2D3Q587I9 215 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 FAM199XQ6PEV8 388 aaPredicted RBP9.58□□□□□ -0.88
USP3-219ENST00000561326 SHISA6Q6ZSJ9 500 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 ASCL5Q7RTU5 278 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 ERMP1Q7Z2K6 904 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 CPEB2Q7Z5Q1 589 aaKnown RBP9.58□□□□□ -0.88
USP3-219ENST00000561326 ANKRD37Q7Z713 158 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 ZDHHC21Q8IVQ6 265 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 PEX5LQ8IYB4 626 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 ESX1Q8N693 406 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 ZNF615Q8N8J6 731 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 CHDHQ8NE62 594 aaPredicted RBP9.58□□□□□ -0.88
USP3-219ENST00000561326 OR1N1Q8NGS0 311 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 C16orf52Q8NHV5 167 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 SLC2A12Q8TD20 617 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 GEMIN6Q8WXD5 167 aaKnown RBP9.58□□□□□ -0.88
USP3-219ENST00000561326 LRTOMTQ8WZ04 291 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 RNF31Q96EP0 1072 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 OTUB1Q96FW1 271 aaPredicted RBP9.58□□□□□ -0.88
USP3-219ENST00000561326 COL21A1Q96P44 957 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 SDF2Q99470 211 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 LPAR4Q99677 370 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 PKP2Q99959 881 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 G6PC3Q9BUM1 346 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 VCXQ9H320 206 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 ARMC7Q9H6L4 198 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 IL1RAPQ9NPH3 570 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 SLC13A4Q9UKG4 626 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 IFT52Q9Y366 437 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 PTRH2Q9Y3E5 179 aaKnown RBP9.58□□□□□ -0.88
USP3-219ENST00000561326 WDR45Q9Y484 360 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 OR10H1Q9Y4A9 318 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 GPC6Q9Y625 555 aaPredicted RBP9.58□□□□□ -0.88
USP3-219ENST00000561326 KCNE3Q9Y6H6 103 aa9.58□□□□□ -0.88
USP3-219ENST00000561326 C2orf92A0A1B0GVN3 265 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 HRKO00198 91 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 CASQ2O14958 399 aaPredicted RBP9.57□□□□□ -0.88
USP3-219ENST00000561326 TPST1O60507 370 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 TNFSF15O95150 251 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 DDAH2O95865 285 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 CST1P01037 141 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 IGKV3-11P04433 115 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 ALPPP05187 535 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 FABP3P05413 133 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 TCN2P20062 427 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 DRD5P21918 477 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 RBMS1P29558 406 aaKnown RBP9.57□□□□□ -0.88
USP3-219ENST00000561326 TRHRP34981 398 aaPredicted RBP9.57□□□□□ -0.88
USP3-219ENST00000561326 FOLR3P41439 243 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 NOVA1P51513 510 aaKnown RBP9.57□□□□□ -0.88
USP3-219ENST00000561326 PSMD4P55036 377 aaKnown RBP9.57□□□□□ -0.88
USP3-219ENST00000561326 SLC37A1P57057 533 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 NHLH1Q02575 133 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 LARS2Q15031 903 aaKnown RBP9.57□□□□□ -0.88
USP3-219ENST00000561326 NCF4Q15080 339 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 TRIP10Q15642 601 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 ATP6AP1Q15904 470 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 DECR1Q16698 335 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 CYP27C1Q4G0S4 372 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 EXOSC6Q5RKV6 272 aaKnown RBP9.57□□□□□ -0.88
USP3-219ENST00000561326 DCST2Q5T1A1 773 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 LCN10Q6JVE6 187 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 TMEM205Q6UW68 189 aa9.57□□□□□ -0.88
USP3-219ENST00000561326 WDR53Q7Z5U6 358 aaPredicted RBP9.57□□□□□ -0.88
USP3-219ENST00000561326 AMIGO2Q86SJ2 522 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms