RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ERN1O75460 977 aaKnown RBP16.14■□□□□ 0.17
HDDC3-205ENST00000559898 EPPINO95925 133 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 GABRA1P14867 456 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 CREB1P16220 341 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 NAGAP17050 411 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 DDCP20711 480 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 BMP5P22003 454 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 CEACAM8P31997 349 aaPredicted RBP16.14■□□□□ 0.17
HDDC3-205ENST00000559898 GAS1P54826 345 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 DNAJB13P59910 316 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 VSNL1P62760 191 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 PSG6Q00889 435 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 ZNF763Q0D2J5 394 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 HEPACAMQ14CZ8 416 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 ZNF385BQ569K4 471 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 NOXRED1Q6NXP6 359 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 TMEM81Q6P7N7 255 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 TRIM46Q7Z4K8 759 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 SLC44A2Q8IWA5 706 aaPredicted RBP16.14■□□□□ 0.17
HDDC3-205ENST00000559898 FAM9CQ8IZT9 166 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 CCDC63Q8NA47 563 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 C9orf106Q8NAJ2 232 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 ABTB1Q969K4 478 aaPredicted RBP16.14■□□□□ 0.17
HDDC3-205ENST00000559898 COL21A1Q96P44 957 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 BBS4Q96RK4 519 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 TRIB1Q96RU8 372 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 G6PC3Q9BUM1 346 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 MECRQ9BV79 373 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 SLC17A7Q9P2U7 560 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 GIMAP2Q9UG22 337 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 STK38LQ9Y2H1 464 aa16.14■□□□□ 0.17
HDDC3-205ENST00000559898 TLDC2A0PJX2 215 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 COPEO14579 308 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 PLOD3O60568 738 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 CHRNGP07510 517 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 CYP4B1P13584 511 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 ARRB2P32121 409 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 NCBP2P52298 156 aaKnown RBP eCLIP16.13■□□□□ 0.17
HDDC3-205ENST00000559898 IMPG1Q17R60 797 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 CCDC153Q494R4 210 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 NHSL2Q5HYW2 709 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 SH2D4BQ5SQS7 431 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 SLC30A6Q6NXT4 461 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 Q6ZSR9 355 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 LARP4Q71RC2 724 aaKnown RBP eCLIP16.13■□□□□ 0.17
HDDC3-205ENST00000559898 NUDT8Q8WV74 236 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 RNF138Q8WVD3 245 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 CIDECQ96AQ7 238 aaPredicted RBP16.13■□□□□ 0.17
HDDC3-205ENST00000559898 TRIM44Q96DX7 344 aaPredicted RBP16.13■□□□□ 0.17
HDDC3-205ENST00000559898 SLC35A4Q96G79 324 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 SH3GL2Q99962 352 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 MYNNQ9NPC7 610 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 GRID1Q9ULK0 1009 aa16.13■□□□□ 0.17
HDDC3-205ENST00000559898 MED12LQ86YW9 2145 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 OR6C70A6NIJ9 312 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 AHRRA9YTQ3 701 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 UPK1AO00322 258 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 EFNA1P20827 205 aaPredicted RBP16.12■□□□□ 0.17
HDDC3-205ENST00000559898 DCAF7P61962 342 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 SRYQ05066 204 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 ZNF155Q12901 538 aaPredicted RBP16.12■□□□□ 0.17
HDDC3-205ENST00000559898 FOXF2Q12947 444 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 CFAP157Q5JU67 520 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 LIPMQ5VYY2 423 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 ZNF551Q7Z340 670 aaPredicted RBP16.12■□□□□ 0.17
HDDC3-205ENST00000559898 CDH24Q86UP0 819 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 ZZZ3Q8IYH5 903 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 EIF1ADQ8N9N8 165 aaKnown RBP16.12■□□□□ 0.17
HDDC3-205ENST00000559898 CLHC1Q8NHS4 586 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 ZBTB9Q96C00 473 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 CCDC126Q96EE4 140 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 AMDHD1Q96NU7 426 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 TUBA1CQ9BQE3 449 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 OR2B2Q9GZK3 357 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 LIME1Q9H400 295 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 BAIAP2L1Q9UHR4 511 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 PCDHGB3Q9Y5G1 929 aa16.12■□□□□ 0.17
HDDC3-205ENST00000559898 ANKRD17O75179 2603 aaKnown RBP16.11■□□□□ 0.17
HDDC3-205ENST00000559898 GXYLT2A0PJZ3 443 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 SCO2O43819 266 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 SPAG7O75391 227 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 SEC22BO75396 215 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 CRCPO75575 148 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 RSL1D1O76021 490 aaKnown RBP16.11■□□□□ 0.17
HDDC3-205ENST00000559898 PSMG1O95456 288 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 LINC00032P0C843 101 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 UROSP10746 265 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 ALDH3A1P30838 453 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 CCT5P48643 541 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 RPP38P78345 283 aaKnown RBP16.11■□□□□ 0.17
HDDC3-205ENST00000559898 MYBPHQ13203 477 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 TESK1Q15569 626 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 ERCC6LQ2NKX8 1250 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 NSUN5P2Q63ZY6 315 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 GALNT10Q86SR1 603 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 TRIM42Q8IWZ5 723 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 OR14L1PQ8NHC6 308 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 ZNF559Q9BR84 538 aa16.11■□□□□ 0.17
HDDC3-205ENST00000559898 RYDENQ9NUL5 291 aaKnown RBP16.11■□□□□ 0.17
HDDC3-205ENST00000559898 RPH3AQ9Y2J0 694 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms