RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CXorf21Q9HAI6 301 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 CACYBPQ9HB71 228 aaKnown RBP24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 ADAP2Q9NPF8 381 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 RNF6Q9Y252 685 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 SH3PXD2BA1X283 911 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 AHCYL1O43865 530 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 SOX30O94993 753 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 FNTBP49356 437 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 MAP4K2Q12851 820 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 PIN1Q13526 163 aaPredicted RBP24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 SEC23BQ15437 767 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 NPTX1Q15818 432 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 XAF1Q6GPH4 301 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 LAIR1Q6GTX8 287 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 KLHL17Q6TDP4 642 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 ZNF595Q8IYB9 648 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 SGCDQ92629 289 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 AHCYL2Q96HN2 611 aaKnown RBP24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 DGCR6LQ9BY27 220 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 UCK2Q9BZX2 261 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 FANCEQ9HB96 536 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 PAK1IP1Q9NWT1 392 aaPredicted RBP24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 KLHL28Q9NXS3 571 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 WDR45Q9Y484 360 aa24.59■■□□□ 1.53
CCDC88C-205ENST00000553403 XPNPEP2O43895 674 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 PCDHGA12O60330 932 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 CTNSO60931 367 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 AK1P00568 194 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 ALDH4A1P30038 563 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 MAP3K8P41279 467 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 TUBA3CQ13748 450 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 TYW3Q6IPR3 259 aaKnown RBP24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 HMGN2P46Q86SG4 172 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 FKBP10Q96AY3 582 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 SDF2Q99470 211 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 ZNF350Q9GZX5 532 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 CCNB1IP1Q9NPC3 277 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 ENAMQ9NRM1 1142 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 HCN3Q9P1Z3 774 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 PCDHGB1Q9Y5G3 927 aa24.58■■□□□ 1.53
CCDC88C-205ENST00000553403 TECTAO75443 2155 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 IGHV1OR21-1A0A087WYE8 117 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 PTGES3LE9PB15 166 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 OR10H2O60403 315 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 FCMRO60667 390 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 COQ9O75208 318 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 WBP4O75554 376 aaKnown RBP24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 CT62P0C5K7 136 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 GPR3P46089 330 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 AVPR1BP47901 424 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 UGT2B15P54855 530 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 SLC35A2P78381 396 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 IGLV3-21P80748 117 aaPredicted RBP24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 COL9A2Q14055 689 aaPredicted RBP24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 NKAIN2Q5VXU1 208 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 Q6ZPB1 254 aaPredicted RBP24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 CLVS1Q8IUQ0 354 aaPredicted RBP24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 PEX5LQ8IYB4 626 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 SLC25A45Q8N413 288 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 OR13F1Q8NGS4 319 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 ZNF420Q8TAQ5 688 aaPredicted RBP24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 FAM81AQ8TBF8 368 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 APH1BQ8WW43 257 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 IPCEF1Q8WWN9 437 aaPredicted RBP24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 HOXB13Q92826 284 aaPredicted RBP24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 ZG16BQ96DA0 208 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 FTSJ1Q9UET6 329 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 ZNF232Q9UNY5 417 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 ZNF443Q9Y2A4 671 aaPredicted RBP24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 THADAQ6YHU6 1953 aa24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 TP53BP1Q12888 1972 aaPredicted RBP24.57■■□□□ 1.52
CCDC88C-205ENST00000553403 OR10H3O60404 316 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 POU2F1P14859 743 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 CRISP1P54107 249 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 OR1D5P58170 312 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 BNIP3Q12983 259 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 NR1D2Q14995 579 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 RHOXF1Q8NHV9 184 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 SLC7A13Q8TCU3 470 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 PMM1Q92871 262 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 SAP130Q9H0E3 1048 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 RASSF1Q9NS23 344 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 IRAK4Q9NWZ3 460 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 GON4LQ3T8J9 2241 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 SPAG17Q6Q759 2223 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 ZAR1LA6NP61 321 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 H0YIG0 161 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 CLDN4O14493 209 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 FAM20BO75063 409 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 SEC14L2O76054 403 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 THBS1P07996 1170 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 OSMP13725 252 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 GLB1P16278 677 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 ITIH1P19827 911 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 DUSP8Q13202 625 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 LSAMPQ13449 338 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 GRM7Q14831 915 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 LARS2Q15031 903 aaKnown RBP24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 LYSMD4Q5XG99 296 aa24.56■■□□□ 1.52
CCDC88C-205ENST00000553403 PGBD2Q6P3X8 592 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms