RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 OR2M7Q8NG81 312 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 PSMA8Q8TAA3 256 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 FBXO30Q8TB52 745 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 GIMAP5Q96F15 307 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 SLX1AQ9BQ83 275 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 C3orf14Q9HBI5 128 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 PROK2Q9HC23 129 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 ZCCHC3Q9NUD5 404 aaKnown RBP12.98□□□□□ -0.33
PTCH1-226ENST00000553011 RYDENQ9NUL5 291 aaKnown RBP12.98□□□□□ -0.33
PTCH1-226ENST00000553011 NTMQ9P121 344 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 CNOT11Q9UKZ1 510 aaKnown RBP12.98□□□□□ -0.33
PTCH1-226ENST00000553011 SNX8Q9Y5X2 465 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 TP53I11O14683 189 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 UGT2B11O75310 529 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 REM1O75628 298 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 NAGAP17050 411 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 CNR1P21554 472 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 GNLYP22749 145 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 S100A3P33764 101 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 CCT3P49368 545 aaKnown RBP12.97□□□□□ -0.33
PTCH1-226ENST00000553011 TDGF1P3P51864 188 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 ALDH6A1Q02252 535 aaKnown RBP12.97□□□□□ -0.33
PTCH1-226ENST00000553011 MRPL49Q13405 166 aaKnown RBP12.97□□□□□ -0.33
PTCH1-226ENST00000553011 GSTA3Q16772 222 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 DPY19L1Q2PZI1 675 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 ATCAYQ86WG3 371 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 FBXW8Q8N3Y1 598 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 ZFP62Q8NB50 900 aaPredicted RBP12.97□□□□□ -0.33
PTCH1-226ENST00000553011 OR9I1Q8NGQ6 314 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 OR5AK3PQ8NH89 298 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 RFWD2Q8NHY2 731 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 SPPL2AQ8TCT8 520 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 DIO2Q92813 273 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 HGDQ93099 445 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 C16orf58Q96GQ5 468 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 MS4A4EQ96PG1 132 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 FAM173AQ9BQD7 235 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 YIPF4Q9BSR8 244 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 LMF2Q9BU23 707 aaKnown RBP12.97□□□□□ -0.33
PTCH1-226ENST00000553011 CCDC28BQ9BUN5 200 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 NPHS2Q9NP85 383 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 TUBA8Q9NY65 449 aaPredicted RBP12.97□□□□□ -0.33
PTCH1-226ENST00000553011 DCTN4Q9UJW0 460 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 VPS4AQ9UN37 437 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 OR10H1Q9Y4A9 318 aa12.97□□□□□ -0.33
PTCH1-226ENST00000553011 PRSS51A0A1B0GVH4 220 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 GXYLT2A0PJZ3 443 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 NPIPA5E9PKD4 350 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 RNASET2O00584 256 aaKnown RBP12.96□□□□□ -0.33
PTCH1-226ENST00000553011 DYNC1I1O14576 645 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 TSPAN2O60636 221 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 SLC22A3O75751 556 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 WISP1O95388 367 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 CBX6O95503 412 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 CPSF4O95639 269 aaKnown RBP12.96□□□□□ -0.33
PTCH1-226ENST00000553011 ACP2P11117 423 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 EDN3P14138 238 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 ZNF24P17028 368 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 GABRA3P34903 492 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 SOAT1P35610 550 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 MAP3K8P41279 467 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 PRR5P85299 388 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 GAB1Q13480 694 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 TP53BP2Q13625 1128 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 LASP1Q14847 261 aaKnown RBP12.96□□□□□ -0.33
PTCH1-226ENST00000553011 ZNHIT3Q15649 155 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-226ENST00000553011 SPDYE7PQ495Y7 208 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 ANXA8L1Q5VT79 327 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 MFSD12Q6NUT3 480 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 GK5Q6ZS86 529 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 NUP54Q7Z3B4 507 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 SIAH3Q8IW03 269 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 CLEC4FQ8N1N0 589 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 POGLUT1Q8NBL1 392 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 OR4A15Q8NGL6 344 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 SLC9A6Q92581 669 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 HOXB13Q92826 284 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-226ENST00000553011 EFHD2Q96C19 240 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-226ENST00000553011 OTUB1Q96FW1 271 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-226ENST00000553011 NODALQ96S42 347 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 ADOQ96SZ5 270 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 ZBTB18Q99592 522 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 NEUROD4Q9HD90 331 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 SDR39U1Q9NRG7 319 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-226ENST00000553011 FGFR1OP2Q9NVK5 253 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 ZIM2Q9NZV7 527 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 CNIH4Q9P003 139 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 CBLCQ9ULV8 474 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 NPIPA1Q9UND3 350 aa12.96□□□□□ -0.33
PTCH1-226ENST00000553011 SPTBN1Q01082 2364 aaKnown RBP12.96□□□□□ -0.33
PTCH1-226ENST00000553011 DOPEY2Q9Y3R5 2298 aa12.96□□□□□ -0.34
PTCH1-226ENST00000553011 SPTAN1Q13813 2472 aaKnown RBP12.96□□□□□ -0.34
PTCH1-226ENST00000553011 ANKUB1A6NFN9 424 aa12.95□□□□□ -0.34
PTCH1-226ENST00000553011 OR6C70A6NIJ9 312 aa12.95□□□□□ -0.34
PTCH1-226ENST00000553011 FAM166BA8MTA8 275 aa12.95□□□□□ -0.34
PTCH1-226ENST00000553011 NKX2-2O95096 273 aa12.95□□□□□ -0.34
PTCH1-226ENST00000553011 HMGN2P05204 90 aaKnown RBP12.95□□□□□ -0.34
PTCH1-226ENST00000553011 PGRP06401 933 aa12.95□□□□□ -0.34
PTCH1-226ENST00000553011 IL12BP29460 328 aa12.95□□□□□ -0.34
PTCH1-226ENST00000553011 MDH1P40925 334 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms