RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 GJB1P08034 283 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 CHRNA4P43681 627 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 BRCC3P46736 316 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 RPL14P50914 215 aaKnown RBP8.42□□□□□ -1.06
VPS13D-212ENST00000543766 CSNK2A1P68400 391 aaPredicted RBP8.42□□□□□ -1.06
VPS13D-212ENST00000543766 SURF2Q15527 256 aaPredicted RBP8.42□□□□□ -1.06
VPS13D-212ENST00000543766 DCAF15Q66K64 600 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 LETMD1Q6P1Q0 360 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 GLT6D1Q7Z4J2 308 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 RTN4RL1Q86UN2 441 aaPredicted RBP8.42□□□□□ -1.06
VPS13D-212ENST00000543766 WFDC8Q8IUA0 241 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 C9orf62Q8N4C0 152 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 CSNK2A3Q8NEV1 391 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 OR4M1Q8NGD0 313 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 GPKOWQ92917 476 aaPredicted RBP eCLIP8.42□□□□□ -1.06
VPS13D-212ENST00000543766 RASD2Q96D21 266 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 NXPE2Q96DL1 559 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 ALKBH3Q96Q83 286 aaPredicted RBP8.42□□□□□ -1.06
VPS13D-212ENST00000543766 OR5M11Q96RB7 305 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 ZNF607Q96SK3 696 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 MECRQ9BV79 373 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 RBCK1Q9BYM8 510 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 ANKRD60Q9BZ19 345 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 MCOLN1Q9GZU1 580 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 SHARPINQ9H0F6 387 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 MAGT1Q9H0U3 335 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 UBTD1Q9HAC8 227 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 BFARQ9NZS9 450 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 CCNL1Q9UK58 526 aaPredicted RBP8.42□□□□□ -1.06
VPS13D-212ENST00000543766 GJD2Q9UKL4 321 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 TBC1D24Q9ULP9 559 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 URGCP-MRPS24S4R325 110 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 LTBP1Q14766 1721 aa8.42□□□□□ -1.06
VPS13D-212ENST00000543766 CROCCQ5TZA2 2017 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 A0A1W2PPV4 95 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 KCNU1A8MYU2 1149 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 DISC1C4P0D8 188 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 TLX2O43763 284 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 F10P00742 488 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 IFNA2P01563 188 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 CRYABP02511 175 aaKnown RBP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 ATP6V1FQ16864 119 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 NAPEPLDQ6IQ20 393 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 NPSR1Q6W5P4 371 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 PPIL6Q8IXY8 311 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 TERB2Q8NHR7 220 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 PPWD1Q96BP3 646 aaKnown RBP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 DTD2Q96FN9 168 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 PPP1R16AQ96I34 528 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 PRRC1Q96M27 445 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 TSNAXQ99598 290 aaKnown RBP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 RAD18Q9NS91 495 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 APEX2Q9UBZ4 518 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 PURGQ9UJV8 347 aaKnown RBP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 PNMA8CA0A1B0GUJ8 204 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 AGAP14A8MT82 685 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 GNG7O60262 68 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 SLC34A2O95436 690 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 CRYBA1P05813 215 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 CRHP06850 196 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 ANXA5P08758 320 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 KLRK1P26718 216 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 GCLMP48507 274 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 GTF2H3Q13889 308 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 OR4D1Q15615 310 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 CDKN3Q16667 212 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 TATDN3Q17R31 274 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 C9orf64Q5T6V5 341 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 NXNL2Q5VZ03 156 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 C1orf127Q8N9H9 656 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 ZNF431Q8TF32 576 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 TFB1MQ8WVM0 346 aaKnown RBP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 ATG4AQ8WYN0 398 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 R3HDM4Q96D70 268 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 OR2M4Q96R27 311 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 CFHR5Q9BXR6 569 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 NKX6-2Q9C056 277 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 NIP7Q9Y221 180 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 KLRC4-KLRK1H3BQV0 150 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 RDH16O75452 317 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 MATN4O95460 622 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 LATS1O95835 1130 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 F7P08709 466 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 STOMP27105 288 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 FASLGP48023 281 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 MNX1P50219 401 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 TFAMQ00059 246 aaKnown RBP8.41□□□□□ -1.06
VPS13D-212ENST00000543766 CDK6Q00534 326 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 PTP4A2Q12974 167 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 ENPP2Q13822 863 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 MAMDC4Q6UXC1 1216 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 UBA3Q8TBC4 463 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 GNPDA2Q8TDQ7 276 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 MRGPRDQ8TDS7 321 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 MRGPRFQ96AM1 343 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 AGPAT1Q99943 283 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 WDR18Q9BV38 432 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 SLC12A9Q9BXP2 914 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 C20orf27Q9GZN8 174 aa8.41□□□□□ -1.06
VPS13D-212ENST00000543766 ATXN3LQ9H3M9 355 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms