RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 MYADMQ96S97 322 aa7.56□□□□□ -1.2
PDLIM5-221ENST00000542407 SMAD5Q99717 465 aaKnown RBP7.56□□□□□ -1.2
PDLIM5-221ENST00000542407 CD244Q9BZW8 370 aa7.56□□□□□ -1.2
PDLIM5-221ENST00000542407 IGFLR1Q9H665 355 aa7.56□□□□□ -1.2
PDLIM5-221ENST00000542407 RAD18Q9NS91 495 aa7.56□□□□□ -1.2
PDLIM5-221ENST00000542407 ING3Q9NXR8 418 aa7.56□□□□□ -1.2
PDLIM5-221ENST00000542407 GPR34Q9UPC5 381 aa7.56□□□□□ -1.2
PDLIM5-221ENST00000542407 CCL27Q9Y4X3 112 aa7.56□□□□□ -1.2
PDLIM5-221ENST00000542407 PIKFYVEQ9Y2I7 2098 aa7.56□□□□□ -1.2
PDLIM5-221ENST00000542407 DOCK8Q8NF50 2099 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 TMEM202A6NGA9 273 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 GFYI3L273 518 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 M0R082 166 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 ARNTLO00327 626 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 SLC16A6O15403 523 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 VPS4BO75351 444 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 ERN1O75460 977 aaKnown RBP7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 PRNPP04156 253 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 MPC1LP0DKB6 136 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 TYRP1P17643 537 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 GGT1P19440 569 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 GJA4P35212 333 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 GDF5P43026 501 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 HTR6P50406 440 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 NUDT6P53370 316 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 UGT2B15P54855 530 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 ST8SIA6P61647 398 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 BNC1Q01954 994 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 PLEKHS1Q5SXH7 462 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 LRFN4Q6PJG9 635 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 RNF165Q6ZSG1 346 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 Q6ZSR9 355 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 NAXEQ8NCW5 288 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 OR4M2Q8NGB6 313 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 GPR151Q8TDV0 419 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 BTN2A2Q8WVV5 523 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 RIT1Q92963 219 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 COQ8BQ96D53 544 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 ANAPC16Q96DE5 110 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 DTD2Q96FN9 168 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 FCRL4Q96PJ5 515 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 HBEGFQ99075 208 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 DPYSL5Q9BPU6 564 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 DUSP26Q9BV47 211 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 SLC12A9Q9BXP2 914 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 BTBD1Q9H0C5 482 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 S1PR5Q9H228 398 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 CCNB1IP1Q9NPC3 277 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 ZSCAN32Q9NX65 697 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 SCML1Q9UN30 329 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 KPNA3O00505 521 aaPredicted RBP7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 TCAPO15273 167 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 KIAA0513O60268 411 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 PCDHGA12O60330 932 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 ELFN1P0C7U0 828 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 JUNDP17535 347 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 CTSCP53634 463 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 CRISP3P54108 245 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 IL18R1Q13478 541 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 RUNX3Q13761 415 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 ELAVL3Q14576 367 aaKnown RBP7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 PROX2Q3B8N5 592 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 PAN3Q58A45 887 aaKnown RBP7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 PLCZ1Q86YW0 608 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 RASGEF1AQ8N9B8 481 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 GLYATL1Q969I3 302 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 TRMT61AQ96FX7 289 aaKnown RBP7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 GFM1Q96RP9 751 aaKnown RBP7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 CDC6Q99741 560 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 CCDC32Q9BV29 185 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 IPPKQ9H8X2 491 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 AIG1Q9NVV5 245 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 CLEC1BQ9P126 229 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 THAP10Q9P2Z0 257 aaPredicted RBP7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 PCDHGB2Q9Y5G2 931 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 PCDHGA6Q9Y5G7 932 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 PCDHGA5Q9Y5G8 931 aa7.55□□□□□ -1.2
PDLIM5-221ENST00000542407 LINC00862A6NCI5 91 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ZNF879B4DU55 563 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 NPC1O15118 1278 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 HCRTR2O43614 444 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 DFNA5O60443 496 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 UGT2B17O75795 530 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 SLCO2B1O94956 709 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 FBP1P09467 338 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 SMIM6P0DI80 62 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ADRB3P13945 408 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 AKT1P31749 480 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 SLC6A12P48065 614 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 GZMKP49863 264 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 HOXC5Q00444 222 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 DEFA6Q01524 100 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ENPP2Q13822 863 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 MAD2L1BPQ15013 274 aaPredicted RBP7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 POU4F3Q15319 338 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 SEC23BQ15437 767 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 RAB30Q15771 203 aa7.54□□□□□ -1.2
PDLIM5-221ENST00000542407 ETFDHQ16134 617 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms