RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 NTSR1P30989 418 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 CAV3P56539 151 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 DECR1Q16698 335 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 XKR7Q5GH72 579 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 FAM26DQ5JW98 314 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 OR2G6Q5TZ20 316 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 UNC5DQ6UXZ4 953 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 ZNF852Q6ZMS4 543 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 BHLHA9Q7RTU4 235 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 TRIM46Q7Z4K8 759 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 PEG10Q86TG7 708 aaKnown RBP11.07□□□□□ -0.64
SYNPO-204ENST00000519664 SLC44A3Q8N4M1 653 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 ANKK1Q8NFD2 765 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 MSLNLQ96KJ4 702 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 TREX2Q9BQ50 279 aaPredicted RBP11.07□□□□□ -0.64
SYNPO-204ENST00000519664 PLEKHA1Q9HB21 404 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 GPN1Q9HCN4 374 aaPredicted RBP11.07□□□□□ -0.64
SYNPO-204ENST00000519664 ATXN7L1Q9ULK2 861 aaPredicted RBP11.07□□□□□ -0.64
SYNPO-204ENST00000519664 PPT2Q9UMR5 302 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 GRXCR2A6NFK2 248 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 WWP2O00308 870 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 PTTG1O95997 202 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 PEX11BO96011 259 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 CCKBRP32239 447 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 ADH7P40394 386 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 PRLHRP49683 370 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 HSF2Q03933 536 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 C4orf46Q504U0 113 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 MSANTD1Q6ZTZ1 278 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 NUP54Q7Z3B4 507 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 SLC9B2Q86UD5 537 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 GGHQ92820 318 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 TGM7Q96PF1 710 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 P2RY12Q9H244 342 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 PDFQ9HBH1 243 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 TEX10Q9NXF1 929 aaPredicted RBP11.07□□□□□ -0.64
SYNPO-204ENST00000519664 SLC25A37Q9NYZ2 338 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 GRIP1Q9Y3R0 1128 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 MAU2Q9Y6X3 613 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 DOCK3Q8IZD9 2030 aa11.07□□□□□ -0.64
SYNPO-204ENST00000519664 TRBV4-1A0A0J9YWV2 114 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 ABLIM3O94929 683 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 IL7P13232 177 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 ITGB7P26010 798 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 PFN3P60673 137 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 PPP3R1P63098 170 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 IRAK1BP1Q5VVH5 260 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 PLAG1Q6DJT9 500 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 SLCO4C1Q6ZQN7 724 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 OR52E2Q8NGJ4 325 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 EXOSC1Q9Y3B2 195 aaKnown RBP11.06□□□□□ -0.64
SYNPO-204ENST00000519664 CACNG3O60359 315 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 GASTP01350 101 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 F8A1P23610 371 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 SLC6A6P31641 620 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 AHRP35869 848 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 RGS6P49758 472 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 SNRPD2P62316 118 aaKnown RBP11.06□□□□□ -0.64
SYNPO-204ENST00000519664 KEAP1Q14145 624 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 SCGB2B2Q4G0G5 96 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 SOWAHCQ53LP3 525 aaPredicted RBP11.06□□□□□ -0.64
SYNPO-204ENST00000519664 ARHGAP40Q5TG30 622 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 PDZD3Q86UT5 571 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 MMP21Q8N119 569 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 OR52E1Q8NGJ3 308 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 TBC1D15Q8TC07 691 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 C16orf58Q96GQ5 468 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 NIPSNAP1Q9BPW8 284 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 SPATA9Q9BWV2 254 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 AMBRA1Q9C0C7 1298 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 MMP28Q9H239 520 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 MVB12BQ9H7P6 319 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 PRTFDC1Q9NRG1 225 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 RLIMQ9NVW2 624 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 FLRT2O43155 660 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 SCO2O43819 266 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 JRKO75564 520 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 IRS1P35568 1242 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 ACVR1Q04771 509 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 ZNF750Q32MQ0 723 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 AGAP7PQ5VUJ5 663 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 PODNL1Q6PEZ8 512 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 PTRH1Q86Y79 214 aaKnown RBP11.06□□□□□ -0.64
SYNPO-204ENST00000519664 SLC38A5Q8WUX1 472 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 NSMAFQ92636 917 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 AKAP1Q92667 903 aaKnown RBP eCLIP11.06□□□□□ -0.64
SYNPO-204ENST00000519664 LGR4Q9BXB1 951 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 POU2F3Q9UKI9 436 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 TRIP12Q14669 1992 aaPredicted RBP11.06□□□□□ -0.64
SYNPO-204ENST00000519664 C2orf74A8MZ97 194 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 H3BQ06 376 aaPredicted RBP11.06□□□□□ -0.64
SYNPO-204ENST00000519664 SERPINA3P01011 423 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 CFIP05156 583 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 ZNF888P0CJ79 500 aaPredicted RBP11.06□□□□□ -0.64
SYNPO-204ENST00000519664 CHMP24386 653 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 CTGFP29279 349 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 AP3S2P59780 193 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 GAS6Q14393 721 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 DESI1Q6ICB0 168 aa11.06□□□□□ -0.64
SYNPO-204ENST00000519664 PNCKQ6P2M8 343 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms